fgenesh2_kg.1__4007__AT1G49120.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 fgenesh2_kg.1__4007__AT1G49120.1 T001648_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.691 0.560
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.691 0.560
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.691 0.560
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.688 0.580
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.688 0.580
LEP
M06661_2.00 		Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH
DDNDRHDDHDRCGGCGGMGVN		 Dap-seq
OMalley et al.(2016)
LEP_col_a 		0.681 0.580
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.680 0.540
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.680 0.540
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.680 0.540
ERF087
M06573_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYYD
HRRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
AT1G28160_col_a 		0.680 0.560
ERF087
M06574_2.00 		Arabidopsis thaliana
HDYCKCCGCCGYCR
YGRCGGCGGMGRHD		 Dap-seq
OMalley et al.(2016)
AT1G28160_colamp_a 		0.680 0.560
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__4007__AT1G49120.1 AP2 85 135

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
B0310.2 Caenorhabditis elegans WBGene00015138 D 0.000
SBAD_0000510501 Soboliphyme baturini SBAD_0000510501 I 0.000
L892_g1322 Steinernema scapterisci L892_g1322 I 0.000
L893_g22395 Steinernema glaseri L893_g22395 I 0.000
L898_g26631 Steinernema monticolum L898_g26631 I 0.000
maker-nMf.1.1.scaf08525-snap-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf08525-snap-gene-0.5 I 0.000
MhA1_Contig575.frz3.gene2 Meloidogyne hapla MhA1_Contig575.frz3.gene2 I 0.000
NBR_0000708201 Nippostrongylus brasiliensis NBR_0000708201 I 0.000
nOo.2.0.1.g11672 Onchocerca ochengi nOo.2.0.1.g11672 I 0.000
OESDEN_02446 Oesophagostomum dentatum OESDEN_02446 I 0.000
PTRK_0000514200 Parastrongyloides trichosuri PTRK_0000514200 I 0.000
RSKR_0000808100 Rhabditophanes kr3021 RSKR_0000808100 I 0.000
L596_g12501 Steinernema carpocapsae L596_g12501 I 0.000
scaffold28-EXSNAP2012.45 Pristionchus exspectatus scaffold28-EXSNAP2012.45 I 0.000
SPAL_0001464000 Strongyloides papillosus SPAL_0001464000 I 0.000
SSTP_0001056600 Strongyloides stercoralis SSTP_0001056600 I 0.000
SVE_0630300 Strongyloides venezuelensis SVE_0630300 I 0.000
SVUK_0001077701 Strongylus vulgaris SVUK_0001077701 I 0.000
TCNE_0001118001 Toxocara canis TCNE_0001118001 I 0.000
TELCIR_01774 Teladorsagia circumcincta TELCIR_01774 I 0.000
TMUE_s0016009100 Trichuris muris TMUE_s0016009100 I 0.000
TTRE_0000220801 Trichuris trichiura TTRE_0000220801 I 0.000
ANCCAN_15122 Ancylostoma caninum ANCCAN_15122 I 0.000
Bm10487 Brugia malayi Bm10487 I 0.000
CBG08158 Caenorhabditis briggsae CBG08158 I 0.000
CBN30348 Caenorhabditis brenneri CBN30348 I 0.000
CJA07808 Caenorhabditis japonica CJA07808 I 0.000
CRE17142 Caenorhabditis remanei CRE17142 I 0.000
EFV53318 Trichinella spiralis EFV53318 I 0.000
WBGene00240779 Onchocerca volvulus WBGene00240779 I 0.000
Minc12888 Meloidogyne incognita Minc12888 I 0.000
ACAC_0000427301 Angiostrongylus cantonensis ACAC_0000427301 I 0.000
ALUE_0001098001 Ascaris lumbricoides ALUE_0001098001 I 0.000
L889_g30058 Steinernema feltiae L889_g30058 I 0.000
ANCCEY_00087 Ancylostoma ceylanicum ANCCEY_00087 I 0.000
ASU_06106 Ascaris suum ASU_06106 I 0.000
BTMF_0001757301 Brugia timori BTMF_0001757301 I 0.000
BXY_1612500 Bursaphelenchus xylophilus BXY_1612500 I 0.000
D917_07770 Trichinella nativa D917_07770 I 0.000
DICVIV_10692 Dictyocaulus viviparus DICVIV_10692 I 0.000
Hba_12492 Heterorhabditis bacteriophora Hba_12492 I 0.000
HCOI00400800 Haemonchus contortus HCOI00400800 I 0.000
WUBG_01471 Wuchereria bancrofti WUBG_01471 I 0.000