MTR_3g098580 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_3g098580 T002835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.828 0.920
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.828 0.920
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.790 0.860
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.790 0.860
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.790 0.860
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.790 0.860
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.769 0.900
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.719 0.800
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.719 0.800
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.719 0.800
A5JTT1_WHEAT
M09700_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_01 		0.703 0.760
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.702 0.780
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.701 0.780
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.697 0.760
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.694 0.760
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.694 0.760
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.694 0.760
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.692 0.780
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.692 0.780
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.691 0.720
ABR1
M01051_2.00 		Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN		 PBM
Sullivan et al.(2014)
pTH7383 		0.688 0.780
ABR1
M06684_2.00 		Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ABR1_col_a 		0.688 0.780
ABR1
M06685_2.00 		Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ABR1_colamp_a 		0.688 0.780
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.685 0.780
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.685 0.780
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.685 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES72998 AP2 74 125

Links

Other AP2 family TFs
Other Medicago truncatula TFs

663 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY70 Arabidopsis thaliana AT3G56400 D 0.000
Cagra.0925s0056 Capsella grandiflora Cagra.0925s0056 I 0.000
gene13549-v1.0-hybrid Fragaria vesca gene13549-v1.0-hybrid I 0.000
gene13547-v1.0-hybrid Fragaria vesca gene13547-v1.0-hybrid I 0.000
evm.TU.supercontig_19.44 Carica papaya evm.TU.supercontig_19.44 I 0.000
evm.TU.contig_32256 Carica papaya evm.TU.contig_32256 I 0.000
Eucgr.J00106 Eucalyptus grandis Eucgr.J00106 I 0.000
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I 0.000
Ciclev10032192m.g Citrus clementina Ciclev10032192m.g I 0.000
Ciclev10012055m.g Citrus clementina Ciclev10012055m.g I 0.000
Carubv10024972m.g Capsella rubella Carubv10024972m.g I 0.000
Carubv10017349m.g Capsella rubella Carubv10017349m.g I 0.000
Carubv10001559m.g Capsella rubella Carubv10001559m.g I 0.000
Cagra.1642s0039 Capsella grandiflora Cagra.1642s0039 I 0.000
gene21365-v1.0-hybrid Fragaria vesca gene21365-v1.0-hybrid I 0.000
Cagra.0086s0001 Capsella grandiflora Cagra.0086s0001 I 0.000
Bostr.9345s0060 Boechera stricta Bostr.9345s0060 I 0.000
Bostr.20505s0112 Boechera stricta Bostr.20505s0112 I 0.000
mgf002542m Mimulus guttatus mgf002542m I 0.000
Cucsa.177060 Cucumis sativus Cucsa.177060 I 0.000
Cucsa.078810 Cucumis sativus Cucsa.078810 I 0.000
cassava7525.valid.m1 Manihot esculenta cassava7525.valid.m1 I 0.000
cassava7524.valid.m1 Manihot esculenta cassava7524.valid.m1 I 0.000
cassava43790.valid.m1 Manihot esculenta cassava43790.valid.m1 I 0.000
cassava25180.valid.m1 Manihot esculenta cassava25180.valid.m1 I 0.000
cassava23183.valid.m1 Manihot esculenta cassava23183.valid.m1 I 0.000
orange1.1g020291m.g Citrus sinensis orange1.1g020291m.g I 0.000
PDK_20s1440981g001 Phoenix dactylifera PDK_20s1440981g001 I 0.000
chr1.CM0320.400.nd Lotus japonicus chr1.CM0320.400.nd I 0.000
PK21378.1 Cannabis sativa PK21378.1 I 0.000
PK03324.1 Cannabis sativa PK03324.1 I 0.000
Thhalv10016713m.g Eutrema salsugineum Thhalv10016713m.g I 0.000
Thhalv10006146m.g Eutrema salsugineum Thhalv10006146m.g I 0.000
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I 0.000
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I 0.000
SapurV1A.0065s0580 Salix purpurea SapurV1A.0065s0580 I 0.000
Pavir.Cb01173 Panicum virgatum Pavir.Cb01173 I 0.000
Pavir.Ca02012 Panicum virgatum Pavir.Ca02012 I 0.000
orange1.1g021598m.g Citrus sinensis orange1.1g021598m.g I 0.000
gene13554-v1.0-hybrid Fragaria vesca gene13554-v1.0-hybrid I 0.000
MDP0000754989 Malus domestica MDP0000754989 I 0.000
Lus10034244.g Linum usitatissimum Lus10034244.g I 0.000
Lus10030517.g Linum usitatissimum Lus10030517.g I 0.000
Lus10029021.g Linum usitatissimum Lus10029021.g I 0.000
Lus10012870.g Linum usitatissimum Lus10012870.g I 0.000
Gorai.013G008300 Gossypium raimondii Gorai.013G008300 I 0.000
Gorai.010G219200 Gossypium raimondii Gorai.010G219200 I 0.000
Gorai.009G292600 Gossypium raimondii Gorai.009G292600 I 0.000
Gorai.007G107300 Gossypium raimondii Gorai.007G107300 I 0.000
Gorai.001G155800 Gossypium raimondii Gorai.001G155800 I 0.000
29915.m000479 Ricinus communis 29915.m000479 I 0.000
Bra014692 Brassica rapa Bra014692 I 0.000
GLYMA18G44560 Glycine max GLYMA18G44560 I 0.000
GLYMA16G34590 Glycine max GLYMA16G34590 I 0.000
GLYMA14G36446 Glycine max GLYMA14G36446 I 0.000
GLYMA14G36438 Glycine max GLYMA14G36438 I 0.000
GLYMA14G36430 Glycine max GLYMA14G36430 I 0.000
GLYMA06G14720 Glycine max GLYMA06G14720 I 0.000
GLYMA04G40130 Glycine max GLYMA04G40130 I 0.000
GLYMA03G00460 Glycine max GLYMA03G00460 I 0.000
WRKY70 Arabidopsis lyrata fgenesh2_kg.5__2072__AT3G56400.1 I 0.000
fgenesh1_pm.C_scaffold_4001818 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001818 I 0.000
BRADI2G30695 Brachypodium distachyon BRADI2G30695 I 0.000
Bra016974 Brassica rapa Bra016974 I 0.000
GSMUA_Achr9G04830_001 Musa acuminata GSMUA_Achr9G04830_001 I 0.000
Bra007243 Brassica rapa Bra007243 I 0.000
Bra004586 Brassica rapa Bra004586 I 0.000
Bra003239 Brassica rapa Bra003239 I 0.000
Bra000203 Brassica rapa Bra000203 I 0.000
Bo8g090820 Brassica oleracea Bo8g090820 I 0.000
Bo6g071110 Brassica oleracea Bo6g071110 I 0.000
Bo4g190390 Brassica oleracea Bo4g190390 I 0.000
Bo4g012750 Brassica oleracea Bo4g012750 I 0.000
Bo3g035140 Brassica oleracea Bo3g035140 I 0.000
Bo00913s010 Brassica oleracea Bo00913s010 I 0.000
WRKY54 Arabidopsis thaliana AT2G40750 I 0.000
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I 0.000
29729.m002369 Ricinus communis 29729.m002369 I 0.000
Pm019286 Prunus mume Pm019286 I 0.000
Cla015244 Citrullus lanatus Cla015244 I 0.000
Cla007424 Citrullus lanatus Cla007424 I 0.000
Ca_04100 Cicer arietinum Ca_04100 I 0.000
TCM_045556 Theobroma cacao TCM_045556 I 0.000
TCM_006109 Theobroma cacao TCM_006109 I 0.000
TCM_005179 Theobroma cacao TCM_005179 I 0.000
Solyc09g015770.2 Solanum lycopersicum Solyc09g015770.2 I 0.000
Si022702m.g Setaria italica Si022702m.g I 0.000
Sb08g005080 Sorghum bicolor Sb08g005080 I 0.000
Al_scaffold_0004_2305 Arabidopsis lyrata Al_scaffold_0004_2305 I 0.000
POPTR_0014s09190 Populus trichocarpa POPTR_0014s09190 I 0.000
POPTR_0013s09470 Populus trichocarpa POPTR_0013s09470 I 0.000
POPTR_0002s17010 Populus trichocarpa POPTR_0002s17010 I 0.000
PGSC0003DMG400029207 Solanum tuberosum PGSC0003DMG400029207 I 0.000
PGSC0003DMG400008391 Solanum tuberosum PGSC0003DMG400008391 I 0.000
OPUNC07G11930 Oryza punctata OPUNC07G11930 I 0.000
MTR_5g067700 Medicago truncatula MTR_5g067700 I 0.000
MTR_3g093830 Medicago truncatula MTR_3g093830 I 0.000
MLOC_66134 Hordeum vulgare MLOC_66134 I 0.000
MLOC_65699 Hordeum vulgare MLOC_65699 I 0.000
LPERR03G14340 Leersia perrieri LPERR03G14340 I 0.000