OGLUM03G05600 (Oryza glumaepatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OGLUM03G05600 T003221_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.880 0.865
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.880 0.865
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.873 0.865
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.873 0.865
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.858 0.846
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.858 0.846
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.817 0.827
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.817 0.827
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM03G05600.1 AP2 252 309
OGLUM03G05600.1 AP2 351 403

Links

Other AP2 family TFs
Other Oryza glumaepatula TFs

527 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK27109.1 Cannabis sativa PK27109.1 D
Traes_4DS_FE97492F2 Triticum aestivum Traes_4DS_FE97492F2 I
Cucsa.363640 Cucumis sativus Cucsa.363640 I
Cla015261 Citrullus lanatus Cla015261 I
Cla014037 Citrullus lanatus Cla014037 I
VIP1 Vitis vinifera VIT_18s0076g00330 I
TRIUR3_31416 Triticum urartu TRIUR3_31416 I
TRIUR3_12877 Triticum urartu TRIUR3_12877 I
Traes_5DL_841444545 Triticum aestivum Traes_5DL_841444545 I
Traes_5AL_538EC4C86 Triticum aestivum Traes_5AL_538EC4C86 I
mgf003343m Mimulus guttatus mgf003343m I
Traes_4BS_ED206A2BB Triticum aestivum Traes_4BS_ED206A2BB I
Traes_4AL_273ACCFFD Triticum aestivum Traes_4AL_273ACCFFD I
Si026605m.g Setaria italica Si026605m.g I
Si010549m.g Setaria italica Si010549m.g I
Sb08g003940 Sorghum bicolor Sb08g003940 I
AMTR_s00030p00014690 Amborella trichopoda AMTR_s00030p00014690 I
Sb05g003810 Sorghum bicolor Sb05g003810 I
Aquca_023_00109 Aquilegia coerulea Aquca_023_00109 I
Ciclev10001715m.g Citrus clementina Ciclev10001715m.g I
Eucgr.F02715 Eucalyptus grandis Eucgr.F02715 I
Gorai.009G285000 Gossypium raimondii Gorai.009G285000 I
Lus10029773.g Linum usitatissimum Lus10029773.g I
Lus10042802.g Linum usitatissimum Lus10042802.g I
orange1.1g019163m.g Citrus sinensis orange1.1g019163m.g I
Pavir.Ca00211 Panicum virgatum Pavir.Ca00211 I
Pavir.Ha01827 Panicum virgatum Pavir.Ha01827 I
Pavir.Hb01916 Panicum virgatum Pavir.Hb01916 I
SapurV1A.0066s0110 Salix purpurea SapurV1A.0066s0110 I
SapurV1A.0256s0010 Salix purpurea SapurV1A.0256s0010 I
SapurV1A.1302s0050 Salix purpurea SapurV1A.1302s0050 I
LPERR11G03390 Leersia perrieri LPERR11G03390 I
OS12G0162500 Oryza sativa OS12G0162500 I
BGIOSGA037037 Oryza indica BGIOSGA037037 I
BRADI4G24937 Brachypodium distachyon BRADI4G24937 I
BRADI4G41890 Brachypodium distachyon BRADI4G41890 I
F775_08606 Aegilops tauschii F775_08606 I
GRMZM2G079365 Zea mays GRMZM2G079365 I
GRMZM2G136266 Zea mays GRMZM2G136266 I
GRMZM2G146020 Zea mays GRMZM2G146020 I
GRMZM5G821024 Zea mays GRMZM5G821024 I
GSMUA_Achr3G19170_001 Musa acuminata GSMUA_Achr3G19170_001 I
GSMUA_Achr6G13040_001 Musa acuminata GSMUA_Achr6G13040_001 I
GSMUA_Achr6G18130_001 Musa acuminata GSMUA_Achr6G18130_001 I
LPERR12G03530 Leersia perrieri LPERR12G03530 I
MLOC_71198 Hordeum vulgare MLOC_71198 I
OB11G13300 Oryza brachyantha OB11G13300 I
OB12G13750 Oryza brachyantha OB12G13750 I
OBART12G03760 Oryza barthii OBART12G03760 I
POPTR_0005s21300 Populus trichocarpa POPTR_0005s21300 I
ORUFI12G04380 Oryza rufipogon ORUFI12G04380 I
ORUFI11G03840 Oryza rufipogon ORUFI11G03840 I
ORGLA12G0036800 Oryza glaberrima ORGLA12G0036800 I
ONIVA12G03450 Oryza nivara ONIVA12G03450 I
ONIVA11G04030 Oryza nivara ONIVA11G04030 I
OMERI12G02030 Oryza meridionalis OMERI12G02030 I
OLONG_001598 Oryza longistaminata OLONG_001598 I
OGLUM12G04480 Oryza glumaepatula OGLUM12G04480 I
OBART11G03920 Oryza barthii OBART11G03920 I
Traes_5BL_4700CC358 Triticum aestivum Traes_5BL_4700CC358 N
OMERI11G03570 Oryza meridionalis OMERI11G03570 N
Pavir.Cb01934 Panicum virgatum Pavir.Cb01934 N
OPUNC11G03640 Oryza punctata OPUNC11G03640 N
OGLUM11G03630 Oryza glumaepatula OGLUM11G03630 N
OS11G0160500 Oryza sativa OS11G0160500 N
BGIOSGA034853 Oryza indica BGIOSGA034853 N