CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OS08G0474000 *(Oryza sativa)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	OS08G0474000	T004220_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.859	1.000
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.785	0.800
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.785	0.800
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.785	0.800
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.773	0.760
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.767	0.820
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.767	0.820
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.747	0.720
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.747	0.720
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.732	0.720
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.722	0.780
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.722	0.800
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.722	0.800
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.722	0.800
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.721	0.740
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.721	0.740
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.721	0.740
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.719	0.720
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.719	0.720
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.719	0.720
RAP2-6 M00717_2.00	Arabidopsis thaliana	NBGCYGNH	DNCRGCVN	PBM Chang et al.(2013) pTH7225	0.718	0.780
RAP2-6 M00841_2.00	Arabidopsis thaliana	NGCCGHHNNN	NNNDDCGGCN	PBM Franco-Zorrilla et al.(2014) RAP2.6	0.718	0.780
RAP2-6 M06579_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYMD	HKRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) RAP26_col_a	0.718	0.780
RAP2-6 M06580_2.00	Arabidopsis thaliana	CGCCGY	RCGGCG	Dap-seq OMalley et al.(2016) RAP26_colamp_a	0.718	0.780
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.718	0.720
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.718	0.740
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.717	0.720
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.717	0.720
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.713	0.760
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.711	0.740
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.711	0.740
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.710	0.720
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.710	0.720
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.710	0.720
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.710	0.720
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.710	0.720
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.703	0.720
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.701	0.700
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.701	0.680
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.700	0.700
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.700	0.700
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.700	0.700
ERF069 M01604_2.00	Arabidopsis thaliana	NNGCCGNNN	NNNCGGCNN	PBM Weirauch et al.(2014) pTH7550	0.698	0.720
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.696	0.680
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.696	0.680
ERF115 M06657_2.00	Arabidopsis thaliana	CCGCCGYMRYHDCCR	YGGHDRYKRCGGCGG	Dap-seq OMalley et al.(2016) ERF115_col_a	0.695	0.720
ERF115 M06658_2.00	Arabidopsis thaliana	CKCCGCCGYMRYHDY	RHDRYKRCGGCGGMG	Dap-seq OMalley et al.(2016) ERF115_colamp_a	0.695	0.720
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.693	0.740
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.693	0.740
ERF11 M01606_2.00	Arabidopsis thaliana	NHGCCGNHNN	NNDNCGGCDN	PBM Weirauch et al.(2014) pTH8117	0.691	0.700
ERF11 M06575_2.00	Arabidopsis thaliana	NHNNHDSCGCCGYCRHHNNN	NNNDDYGRCGGCGSHDNNDN	Dap-seq OMalley et al.(2016) ERF11_colamp_a	0.691	0.700
ERF11 M06576_2.00	Arabidopsis thaliana	NHNYCKCCGCCGYHD	HDRCGGCGGMGRNDN	Dap-seq OMalley et al.(2016) ERF11_col_b	0.691	0.700
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.690	0.660
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.690	0.660
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.686	0.740
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.685	0.700
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.681	0.680
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.681	0.680
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.681	0.680
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.678	0.720
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.677	0.620
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OS08T0474000-01	AP2	74	125	NKYRGVRQRPWGKWAAEIRDPRRAVRKWLGTFDTAEEAARAYDRAAVEFRGP

Links
Other AP2 family TFs
Other *Oryza sativa* TFs

1791 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Lus10013684.g	Linum usitatissimum	Lus10013684.g	N	0.000
Traes_7DS_197A95728	Triticum aestivum	Traes_7DS_197A95728	N	0.000
TRIUR3_19251	Triticum urartu	TRIUR3_19251	N	0.000
VIT_19s0014g01880	Vitis vinifera	VIT_19s0014g01880	N	0.000
30209.m001510	Ricinus communis	30209.m001510	N	0.000
Cucsa.032420	Cucumis sativus	Cucsa.032420	N	0.000
mgf014854m	Mimulus guttatus	mgf014854m	N	0.000
Aquca_052_00043	Aquilegia coerulea	Aquca_052_00043	N	0.000
Ciclev10008640m.g	Citrus clementina	Ciclev10008640m.g	N	0.000
Eucgr.F01181	Eucalyptus grandis	Eucgr.F01181	N	0.000
gene27205-v1.0-hybrid	Fragaria vesca	gene27205-v1.0-hybrid	N	0.000
Gorai.002G065900	Gossypium raimondii	Gorai.002G065900	N	0.000
Gorai.013G172000	Gossypium raimondii	Gorai.013G172000	N	0.000
TCM_046875	Theobroma cacao	TCM_046875	N	0.000
Lus10017944.g	Linum usitatissimum	Lus10017944.g	N	0.000
MDP0000268133	Malus domestica	MDP0000268133	N	0.000
MDP0000315095	Malus domestica	MDP0000315095	N	0.000
orange1.1g016887m.g	Citrus sinensis	orange1.1g016887m.g	N	0.000
Pavir.Ba02980	Panicum virgatum	Pavir.Ba02980	N	0.000
Pavir.Bb01334	Panicum virgatum	Pavir.Bb01334	N	0.000
SapurV1A.0083s0320	Salix purpurea	SapurV1A.0083s0320	N	0.000
SapurV1A.0303s0100	Salix purpurea	SapurV1A.0303s0100	N	0.000
PK03811.1	Cannabis sativa	PK03811.1	N	0.000
chr3.CM0282.620.nc	Lotus japonicus	chr3.CM0282.620.nc	N	0.000
chr3.CM0282.640.nc	Lotus japonicus	chr3.CM0282.640.nc	N	0.000
OLONG_009303	Oryza longistaminata	OLONG_009303	N	0.000
BGIOSGA021223	Oryza indica	BGIOSGA021223	N	0.000
Bo1g117640	Brassica oleracea	Bo1g117640	N	0.000
Bra037587	Brassica rapa	Bra037587	N	0.000
BRADI1G42040	Brachypodium distachyon	BRADI1G42040	N	0.000
GLYMA06G35561	Glycine max	GLYMA06G35561	N	0.000
GLYMA12G18490	Glycine max	GLYMA12G18490	N	0.000
GRMZM2G126170	Zea mays	GRMZM2G126170	N	0.000
GSMUA_Achr4G18450_001	Musa acuminata	GSMUA_Achr4G18450_001	N	0.000
LPERR06G11990	Leersia perrieri	LPERR06G11990	N	0.000
MLOC_61712	Hordeum vulgare	MLOC_61712	N	0.000
MTR_8g061040	Medicago truncatula	MTR_8g061040	N	0.000
OBART06G15310	Oryza barthii	OBART06G15310	N	0.000
AMTR_s00011p00262800	Amborella trichopoda	AMTR_s00011p00262800	N	0.000
OLONG_009306	Oryza longistaminata	OLONG_009306	N	0.000
OMERI06G16500	Oryza meridionalis	OMERI06G16500	N	0.000
OPUNC06G13910	Oryza punctata	OPUNC06G13910	N	0.000
OPUNC06G13990	Oryza punctata	OPUNC06G13990	N	0.000
ORUFI06G16210	Oryza rufipogon	ORUFI06G16210	N	0.000
OS06G0485100	Oryza sativa	OS06G0485100	N	0.000
POPTR_0011s09970	Populus trichocarpa	POPTR_0011s09970	N	0.000
PRUPE_ppa007389mg	Prunus persica	PRUPE_ppa007389mg	N	0.000
Sb02g020940	Sorghum bicolor	Sb02g020940	N	0.000
Si030167m.g	Setaria italica	Si030167m.g	N	0.000
Solyc10g007130.2	Solanum lycopersicum	Solyc10g007130.2	N	0.000

OS08G0474000 (Oryza sativa) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1791 Related TFs

OS08G0474000 **(Oryza sativa)
AP2**