POPTR_0014s09540 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0014s09540 T004728_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF023
M06560_2.00 		Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH		 Dap-seq
OMalley et al.(2016)
AT1G01250_col_a 		0.803 0.940
ERF023
M06561_2.00 		Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD		 Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a 		0.803 0.940
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.679 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s09540.1 AP2 38 89

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF023 Arabidopsis thaliana AT1G01250 D 0.803
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.679
Ca_17638 Cicer arietinum Ca_17638 I 0.801
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.829
Pm018354 Prunus mume Pm018354 I 0.829
29742.m001400 Ricinus communis 29742.m001400 I 0.841
cassava32974.m1 Manihot esculenta cassava32974.m1 I 0.695
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.797
mgf020568m Mimulus guttatus mgf020568m I 0.804
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.797
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.803
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.803
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.819
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.829
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.795
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.816
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.819
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.829
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.816
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.789
PK15554.1 Cannabis sativa PK15554.1 I 0.829
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.750
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.814
Bo5g002600 Brassica oleracea Bo5g002600 I 0.789
Bo8g117810 Brassica oleracea Bo8g117810 I 0.786
Bra032630 Brassica rapa Bra032630 I 0.799
Bra033274 Brassica rapa Bra033274 I 0.789
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.803
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.809
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.817
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.805
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.819
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.824
Ca_01325 Cicer arietinum Ca_01325 I 0.799
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.681
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.816
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.816
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.816
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.829
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.682
TCM_005130 Theobroma cacao TCM_005130 I 0.816
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.795
PGSC0003DMG400007036 Solanum tuberosum PGSC0003DMG400007036 N 0.681