scaffold_102587.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 scaffold_102587.1 T005084_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF019
M01092_2.00 		Arabidopsis thaliana
CRCCGRCV
BGYCGGYG		 PBM
Lambert et al.(2019)
pTH11534 		0.848 1.000
ERF019
M06571_2.00 		Arabidopsis thaliana
HDYCACCGACAHNNN
NNNDTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a 		0.848 1.000
ERF019
M06572_2.00 		Arabidopsis thaliana
DYCACCGHCRHHDYC
GRHDDYGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g22810_col 		0.848 1.000
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_102587.1 AP2 11 62

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf015980m Mimulus guttatus mgf015980m I
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I
Pm020837 Prunus mume Pm020837 I
PK26692.1 Cannabis sativa PK26692.1 I
mgf014458m Mimulus guttatus mgf014458m N
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N
mgf001526m Mimulus guttatus mgf001526m N
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N
Cucsa.381750 Cucumis sativus Cucsa.381750 N
Cla016088 Citrullus lanatus Cla016088 N
Lus10005066.g Linum usitatissimum Lus10005066.g N
Lus10025058.g Linum usitatissimum Lus10025058.g N
Lus10027839.g Linum usitatissimum Lus10027839.g N
MDP0000155077 Malus domestica MDP0000155077 N
MDP0000202739 Malus domestica MDP0000202739 N
MDP0000225222 Malus domestica MDP0000225222 N
Pavir.Ab00211 Panicum virgatum Pavir.Ab00211 N
Pavir.J33226 Panicum virgatum Pavir.J33226 N
Pavir.J33349 Panicum virgatum Pavir.J33349 N
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N
PK03316.1 Cannabis sativa PK03316.1 N
chr3.CM0112.180.nd Lotus japonicus chr3.CM0112.180.nd N
ORGLA02G0014700 Oryza glaberrima ORGLA02G0014700 N
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N
GLYMA11G11290 Glycine max GLYMA11G11290 N
GLYMA12G03470 Glycine max GLYMA12G03470 N
GRMZM2G389768 Zea mays GRMZM2G389768 N
LPERR02G01370 Leersia perrieri LPERR02G01370 N
OBART02G01600 Oryza barthii OBART02G01600 N
OGLUM02G01470 Oryza glumaepatula OGLUM02G01470 N
OMERI02G00930 Oryza meridionalis OMERI02G00930 N
ONIVA02G01490 Oryza nivara ONIVA02G01490 N
OPUNC02G01060 Oryza punctata OPUNC02G01060 N
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N
ORUFI02G01580 Oryza rufipogon ORUFI02G01580 N
OS02G0121100 Oryza sativa OS02G0121100 N
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N
PGSC0003DMG400001591 Solanum tuberosum PGSC0003DMG400001591 N
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N
Sb04g001720 Sorghum bicolor Sb04g001720 N
Solyc01g111280.2 Solanum lycopersicum Solyc01g111280.2 N
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N
Ca_11038 Cicer arietinum Ca_11038 N
BGIOSGA007226 Oryza indica BGIOSGA007226 N