CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SELMODRAFT_80895 *(Selaginella moellendorffii)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	SELMODRAFT_80895	T005222_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.785	0.750
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.776	0.731
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.776	0.731
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.771	0.712
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.771	0.712
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.771	0.712
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.756	0.731
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.751	0.750
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.751	0.750
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.751	0.750
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.751	0.750
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.751	0.750
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.745	0.712
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.744	0.712
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.739	0.692
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.739	0.692
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.739	0.692
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.735	0.769
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.733	0.731
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.728	0.731
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.728	0.731
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.725	0.615
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.721	0.673
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.718	0.712
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.718	0.712
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.718	0.712
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.718	0.712
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.711	0.731
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.711	0.654
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.710	0.615
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.710	0.731
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.710	0.731
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.706	0.635
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.706	0.635
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.706	0.654
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.701	0.731
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.701	0.731
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.701	0.731
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.701	0.615
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.700	0.692
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.697	0.654
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.697	0.654
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.693	0.596
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.692	0.654
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.692	0.673
ERF098 M01618_2.00	Arabidopsis thaliana	NNGCCGNC	GNCGGCNN	PBM Weirauch et al.(2014) pTH8259	0.692	0.673
ERF13 M01615_2.00	Arabidopsis thaliana	VGCCGSCD	HGSCGGCB	PBM Weirauch et al.(2014) pTH7283	0.692	0.673
ERF13 M06612_2.00	Arabidopsis thaliana	NHDBMGCCGCCDYHD	HDRHGGCGGCKVHDN	Dap-seq OMalley et al.(2016) ERF13_colamp_a	0.692	0.673
ERF13 M06613_2.00	Arabidopsis thaliana	HDBMGCCGCCDYHDN	NHDRHGGCGGCKVHD	Dap-seq OMalley et al.(2016) ERF13_col_b	0.692	0.673
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.691	0.692
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.691	0.692
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.691	0.692
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.690	0.692
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.690	0.692
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.686	0.692
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.686	0.692
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.681	0.692
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.681	0.692
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.681	0.692
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.680	0.654
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.680	0.596
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.680	0.596
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EFJ34323	AP2	102	154	RQYRGVRRRPWGKFAAEIRDSTKQGARIWLGTFETAEEAAIAYDQAAFKMRGR

Links
Other AP2 family TFs
Other *Selaginella moellendorffii* TFs

1797 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
KLF6	Homo sapiens	ENSG00000067082	D	0.000
Sakowv30032823m.g	Saccoglossus kowalevskii	Sakowv30032823m.g	I	0.000
ENSPFOG00000015451	Poecilia formosa	ENSPFOG00000015451	I	0.000
ENSLOCG00000003791	Lepisosteus oculatus	ENSLOCG00000003791	I	0.000
KLF6	Callithrix jacchus	ENSCJAG00000032379	I	0.000
Cflo_16445--XP_624772.1_APIME	Camponotus floridanus	Cflo_16445--XP_624772.1_APIME	N	0.000
estExt_fgenesh2_pg.C_20012	Branchiostoma floridae	estExt_fgenesh2_pg.C_20012	N	0.000
Tal_R005095	Tyto alba	Tal_R005095	N	0.000
Tal_R002680	Tyto alba	Tal_R002680	N	0.000
Pvit_06515	Pogona vitticeps	Pvit_06515	N	0.000
Ogr05338	Ophisaurus gracilis	Ogr05338	N	0.000
Hsal_02965--XP_624772.1_APIME	Harpegnathos saltator	Hsal_02965--XP_624772.1_APIME	N	0.000
CLEC000374	Cimex lectularius	CLEC000374	N	0.000
Cflo_01443--XP_624772.1_APIME	Camponotus floridanus	Cflo_01443--XP_624772.1_APIME	N	0.000
Cflo_00615--XP_001121679.1_APIME	Camponotus floridanus	Cflo_00615--XP_001121679.1_APIME	N	0.000
Brh_R008554	Buceros rhinoceros	Brh_R008554	N	0.000
Brh_R001625	Buceros rhinoceros	Brh_R001625	N	0.000
Alligator_sinensis_CCG013371.1	Alligator sinensis	Alligator_sinensis_CCG013371.1	N	0.000
TC003611	Tribolium castaneum	TC003611	N	0.000
SMAR000017	Strigamia maritima	SMAR000017	N	0.000
SINV23345	Solenopsis invicta	SINV23345	N	0.000
RPRC011844	Rhodnius prolixus	RPRC011844	N	0.000
AEPI009274	Anopheles epiroticus	AEPI009274	N	0.000
HDID_0000086901	Hymenolepis diminuta	HDID_0000086901	N	0.000
ANCCEY_14935	Ancylostoma ceylanicum	ANCCEY_14935	N	0.000
PPAI010678	Phlebotomus papatasi	PPAI010678	N	0.000
LLOJ001749	Lutzomyia longipalpis	LLOJ001749	N	0.000
BGLB001603	Biomphalaria glabrata	BGLB001603	N	0.000
AQUA001972	Anopheles quadriannulatus	AQUA001972	N	0.000
AMEM000352	Anopheles merus	AMEM000352	N	0.000
AMEC017016	Anopheles melas	AMEC017016	N	0.000
Ocbimv22007603m.g	Octopus bimaculoides	Ocbimv22007603m.g	N	0.000
AEPI003098	Anopheles epiroticus	AEPI003098	N	0.000
ACOM031370	Anopheles coluzzii	ACOM031370	N	0.000
AARA009355	Anopheles arabiensis	AARA009355	N	0.000
LDEC024398	Leptinotarsa decemlineata	LDEC024398	N	0.000
LDEC010928	Leptinotarsa decemlineata	LDEC010928	N	0.000
HHAL008173-PA	Halyomorpha halys	HHAL008173-PA	N	0.000
HHAL000942-PA	Halyomorpha halys	HHAL000942-PA	N	0.000
L798_04124	Zootermopsis nevadensis	L798_04124	N	0.000
KLF1	Echinops telfairi	ENSETEG00000002006	N	0.000
ENSOPRG00000000197	Ochotona princeps	ENSOPRG00000000197	N	0.000
KLF12	Oryctolagus cuniculus	ENSOCUG00000004244	N	0.000
ENSOARG00000018838	Ovis aries	ENSOARG00000018838	N	0.000
KLF15	Monodelphis domestica	ENSMODG00000022616	N	0.000
ENSGMOG00000013781	Gadus morhua	ENSGMOG00000013781	N	0.000
ENSGALG00000028383	Gallus gallus	ENSGALG00000028383	N	0.000
KLF15	Felis catus	ENSFCAG00000015732	N	0.000
ENSFALG00000014565	Ficedula albicollis	ENSFALG00000014565	N	0.000
KLF5	Ochotona princeps	ENSOPRG00000007620	N	0.000
klf4	Danio rerio	ENSDARG00000079922	N	0.000
KLF9	Canis familiaris	ENSCAFG00000001867	N	0.000
ENSBTAG00000048085	Bos taurus	ENSBTAG00000048085	N	0.000
KLF6	Bos taurus	ENSBTAG00000015188	N	0.000
CPIJ012901	Culex quinquefasciatus	CPIJ012901	N	0.000
Bm12319	Brugia malayi	Bm12319	N	0.000
Bm11731	Brugia malayi	Bm11731	N	0.000
ACEP19659	Atta cephalotes	ACEP19659	N	0.000
KLF10	Tupaia belangeri	ENSTBEG00000007597	N	0.000
MESCA001789	Megaselia scalaris	MESCA001789	N	0.000
CpipJ_CPIJ012901	Culex pipiens	CpipJ_CPIJ012901	N	0.000
ISCW004118	Ixodes scapularis	ISCW004118	N	0.000
GA28679	Drosophila pseudoobscura	FBgn0250039	N	0.000
GA25126	Drosophila pseudoobscura	FBgn0246509	N	0.000
ENSTTRG00000010639	Tursiops truncatus	ENSTTRG00000010639	N	0.000
KLF15	Taeniopygia guttata	ENSTGUG00000008214	N	0.000
KLF3	Tupaia belangeri	ENSTBEG00000015639	N	0.000
PHUM399820	Pediculus humanus	PHUM399820	N	0.000
ENSSHAG00000001834	Sarcophilus harrisii	ENSSHAG00000001834	N	0.000
KLF15	Sorex araneus	ENSSARG00000012869	N	0.000
ENSSARG00000006987	Sorex araneus	ENSSARG00000006987	N	0.000
Klf7	Rattus norvegicus	ENSRNOG00000012961	N	0.000
KLF1	Pteropus vampyrus	ENSPVAG00000014711	N	0.000
ENSPSIG00000013477	Pelodiscus sinensis	ENSPSIG00000013477	N	0.000
ENSPSIG00000008887	Pelodiscus sinensis	ENSPSIG00000008887	N	0.000
KLF3	Procavia capensis	ENSPCAG00000015573	N	0.000

SELMODRAFT_80895 (Selaginella moellendorffii) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1797 Related TFs

SELMODRAFT_80895 **(Selaginella moellendorffii)
AP2**