RRTF1 (Vitis vinifera)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 VIT_03s0063g00460 T006032_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.764 0.780
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.764 0.780
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.758 0.820
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.758 0.820
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.758 0.820
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.758 0.820
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.756 0.940
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.753 0.920
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.750 0.840
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.748 0.840
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.748 0.840
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.748 0.840
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.713 0.760
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.681 0.800
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.681 0.800
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.681 0.800
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.680 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_03s0063g00460.t01 AP2 118 169

Links

Other AP2 family TFs
Other Vitis vinifera TFs

615 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TGA6 Arabidopsis thaliana AT3G12250 D 0.000
TGA2 Arabidopsis thaliana AT5G06950 D 0.000
TGA5 Arabidopsis thaliana AT5G06960 D 0.000
HBP1B_WHEAT Triticum aestivum HBP1B_WHEAT D 0.000
PK09021.1 Cannabis sativa PK09021.1 D 0.000
BGIOSGA000624 Oryza indica BGIOSGA000624 I 0.000
BGIOSGA003265 Oryza indica BGIOSGA003265 I 0.000
Bo1g139470 Brassica oleracea Bo1g139470 I 0.000
Bo2g007460 Brassica oleracea Bo2g007460 I 0.000
Bo3g064830 Brassica oleracea Bo3g064830 I 0.000
Bo5g133550 Brassica oleracea Bo5g133550 I 0.000
Bo9g175710 Brassica oleracea Bo9g175710 I 0.000
Bra001443 Brassica rapa Bra001443 I 0.000
Bra009241 Brassica rapa Bra009241 I 0.000
Bra028713 Brassica rapa Bra028713 I 0.000
Bra034767 Brassica rapa Bra034767 I 0.000
Bra038705 Brassica rapa Bra038705 I 0.000
BRADI2G10830 Brachypodium distachyon BRADI2G10830 I 0.000
TGA6 Arabidopsis lyrata fgenesh2_kg.3__1288__AT3G12250.4 I 0.000
OBF5 Arabidopsis lyrata fgenesh2_kg.6__648__AT5G06960.1 I 0.000
GLYMA03G28320 Glycine max GLYMA03G28320 I 0.000
GLYMA13G26280 Glycine max GLYMA13G26280 I 0.000
GLYMA15G37220 Glycine max GLYMA15G37220 I 0.000
GLYMA19G31050 Glycine max GLYMA19G31050 I 0.000
GLYMA20G39050 Glycine max GLYMA20G39050 I 0.000
GRMZM2G019907 Zea mays GRMZM2G019907 I 0.000
GRMZM2G030280 Zea mays GRMZM2G030280 I 0.000
GRMZM2G125243 Zea mays GRMZM2G125243 I 0.000
GSMUA_Achr10G00340_001 Musa acuminata GSMUA_Achr10G00340_001 I 0.000
GSMUA_Achr11G25140_001 Musa acuminata GSMUA_Achr11G25140_001 I 0.000
GSMUA_Achr3G11150_001 Musa acuminata GSMUA_Achr3G11150_001 I 0.000
GSMUA_Achr3G25020_001 Musa acuminata GSMUA_Achr3G25020_001 I 0.000
GSMUA_Achr8G05800_001 Musa acuminata GSMUA_Achr8G05800_001 I 0.000
GSMUA_Achr8G21670_001 Musa acuminata GSMUA_Achr8G21670_001 I 0.000
LPERR01G10700 Leersia perrieri LPERR01G10700 I 0.000
LPERR05G17110 Leersia perrieri LPERR05G17110 I 0.000
MTR_7g089800 Medicago truncatula MTR_7g089800 I 0.000
MTR_8g040120 Medicago truncatula MTR_8g040120 I 0.000
OB01G21470 Oryza brachyantha OB01G21470 I 0.000
OB01G43330 Oryza brachyantha OB01G43330 I 0.000
OBART01G11380 Oryza barthii OBART01G11380 I 0.000
OBART01G34430 Oryza barthii OBART01G34430 I 0.000
OGLUM01G20660 Oryza glumaepatula OGLUM01G20660 I 0.000
OGLUM05G22440 Oryza glumaepatula OGLUM05G22440 I 0.000
OLONG_003165 Oryza longistaminata OLONG_003165 I 0.000
OLONG_020675 Oryza longistaminata OLONG_020675 I 0.000
OMERI01G31730 Oryza meridionalis OMERI01G31730 I 0.000
ONIVA01G13810 Oryza nivara ONIVA01G13810 I 0.000
ONIVA01G39320 Oryza nivara ONIVA01G39320 I 0.000
ONIVA05G21900 Oryza nivara ONIVA05G21900 I 0.000
OPUNC01G11270 Oryza punctata OPUNC01G11270 I 0.000
OPUNC01G33450 Oryza punctata OPUNC01G33450 I 0.000
OPUNC05G18920 Oryza punctata OPUNC05G18920 I 0.000
ORUFI01G12420 Oryza rufipogon ORUFI01G12420 I 0.000
ORUFI01G37800 Oryza rufipogon ORUFI01G37800 I 0.000
TGA2.3 Oryza sativa OS01G0279900 I 0.000
OS01G0808100 Oryza sativa OS01G0808100 I 0.000
OS05G0492000 Oryza sativa OS05G0492000 I 0.000
PGSC0003DMG400009449 Solanum tuberosum PGSC0003DMG400009449 I 0.000
POPTR_0001s06700 Populus trichocarpa POPTR_0001s06700 I 0.000
POPTR_0006s03720 Populus trichocarpa POPTR_0006s03720 I 0.000
POPTR_0006s05770 Populus trichocarpa POPTR_0006s05770 I 0.000
PAN Populus trichocarpa POPTR_0008s11710 I 0.000
POPTR_0016s03590 Populus trichocarpa POPTR_0016s03590 I 0.000
POPTR_0016s04970 Populus trichocarpa POPTR_0016s04970 I 0.000
PRUPE_ppa003825mg Prunus persica PRUPE_ppa003825mg I 0.000
PRUPE_ppa005279mg Prunus persica PRUPE_ppa005279mg I 0.000
Sb03g006790 Sorghum bicolor Sb03g006790 I 0.000
Sb03g037560 Sorghum bicolor Sb03g037560 I 0.000
Si001292m.g Setaria italica Si001292m.g I 0.000
Si002195m.g Setaria italica Si002195m.g I 0.000
Solyc11g064950.1 Solanum lycopersicum Solyc11g064950.1 I 0.000
TCM_011845 Theobroma cacao TCM_011845 I 0.000
TCM_023491 Theobroma cacao TCM_023491 I 0.000
TCM_023492 Theobroma cacao TCM_023492 I 0.000
TCM_024862 Theobroma cacao TCM_024862 I 0.000
TRAES3BF003000030CFD_g Triticum aestivum TRAES3BF003000030CFD_g I 0.000
PAN Vitis vinifera VIT_01s0011g03230 I 0.000
VIT_08s0007g05170 Vitis vinifera VIT_08s0007g05170 I 0.000
TGA10 Vitis vinifera VIT_08s0007g06160 I 0.000
VIT_13s0084g00660 Vitis vinifera VIT_13s0084g00660 I 0.000
VIT_18s0001g04470 Vitis vinifera VIT_18s0001g04470 I 0.000
Ca_07170 Cicer arietinum Ca_07170 I 0.000
Ca_10901 Cicer arietinum Ca_10901 I 0.000
Ca_17971 Cicer arietinum Ca_17971 I 0.000
Cla002918 Citrullus lanatus Cla002918 I 0.000
Cla010092 Citrullus lanatus Cla010092 I 0.000
Cla017796 Citrullus lanatus Cla017796 I 0.000
Cla022393 Citrullus lanatus Cla022393 I 0.000
Pm016643 Prunus mume Pm016643 I 0.000
Pm025995 Prunus mume Pm025995 I 0.000
Pm028917 Prunus mume Pm028917 I 0.000
29216.m000249 Ricinus communis 29216.m000249 I 0.000
30131.m007163 Ricinus communis 30131.m007163 I 0.000
cassava1426.valid.m1 Manihot esculenta cassava1426.valid.m1 I 0.000
cassava1427.valid.m1 Manihot esculenta cassava1427.valid.m1 I 0.000
cassava22236.valid.m1 Manihot esculenta cassava22236.valid.m1 I 0.000
cassava22237.valid.m1 Manihot esculenta cassava22237.valid.m1 I 0.000
cassava39253.m1 Manihot esculenta cassava39253.m1 I 0.000
cassava39733.m1 Manihot esculenta cassava39733.m1 I 0.000
cassava6928.valid.m1 Manihot esculenta cassava6928.valid.m1 I 0.000
Cucsa.005120 Cucumis sativus Cucsa.005120 I 0.000
Cucsa.242870 Cucumis sativus Cucsa.242870 I 0.000
Cucsa.307820 Cucumis sativus Cucsa.307820 I 0.000
Cucsa.337740 Cucumis sativus Cucsa.337740 I 0.000
mgf005858m Mimulus guttatus mgf005858m I 0.000
mgf025345m Mimulus guttatus mgf025345m I 0.000
Aquca_004_00791 Aquilegia coerulea Aquca_004_00791 I 0.000
Aquca_009_00172 Aquilegia coerulea Aquca_009_00172 I 0.000
Aquca_009_00424 Aquilegia coerulea Aquca_009_00424 I 0.000
Bostr.13129s0278 Boechera stricta Bostr.13129s0278 I 0.000
Bostr.13129s0279 Boechera stricta Bostr.13129s0279 I 0.000
Bostr.3640s0002 Boechera stricta Bostr.3640s0002 I 0.000
Cagra.0430s0055 Capsella grandiflora Cagra.0430s0055 I 0.000
Cagra.16209s0003 Capsella grandiflora Cagra.16209s0003 I 0.000
Cagra.16209s0004 Capsella grandiflora Cagra.16209s0004 I 0.000
Carubv10001409m.g Capsella rubella Carubv10001409m.g I 0.000
Carubv10001413m.g Capsella rubella Carubv10001413m.g I 0.000
Ciclev10001081m.g Citrus clementina Ciclev10001081m.g I 0.000
Ciclev10005080m.g Citrus clementina Ciclev10005080m.g I 0.000
Ciclev10031361m.g Citrus clementina Ciclev10031361m.g I 0.000
Eucgr.A02240 Eucalyptus grandis Eucgr.A02240 I 0.000
Eucgr.B03855 Eucalyptus grandis Eucgr.B03855 I 0.000
Eucgr.G03217 Eucalyptus grandis Eucgr.G03217 I 0.000
Eucgr.K01643 Eucalyptus grandis Eucgr.K01643 I 0.000
evm.TU.supercontig_1.202 Carica papaya evm.TU.supercontig_1.202 I 0.000
evm.TU.supercontig_5.165 Carica papaya evm.TU.supercontig_5.165 I 0.000
evm.TU.supercontig_847.1 Carica papaya evm.TU.supercontig_847.1 I 0.000
evm.TU.supercontig_85.93 Carica papaya evm.TU.supercontig_85.93 I 0.000
gene00517-v1.0-hybrid Fragaria vesca gene00517-v1.0-hybrid I 0.000
gene21882-v1.0-hybrid Fragaria vesca gene21882-v1.0-hybrid I 0.000
Gorai.001G122100 Gossypium raimondii Gorai.001G122100 I 0.000
Gorai.002G228200 Gossypium raimondii Gorai.002G228200 I 0.000
Gorai.006G141000 Gossypium raimondii Gorai.006G141000 I 0.000
Gorai.007G352600 Gossypium raimondii Gorai.007G352600 I 0.000
Gorai.008G185000 Gossypium raimondii Gorai.008G185000 I 0.000
Gorai.011G217200 Gossypium raimondii Gorai.011G217200 I 0.000
Gorai.013G001700 Gossypium raimondii Gorai.013G001700 I 0.000
Gorai.013G081100 Gossypium raimondii Gorai.013G081100 I 0.000
Lus10008658.g Linum usitatissimum Lus10008658.g I 0.000
Lus10024140.g Linum usitatissimum Lus10024140.g I 0.000
Lus10026166.g Linum usitatissimum Lus10026166.g I 0.000
MDP0000262210 Malus domestica MDP0000262210 I 0.000
MDP0000300532 Malus domestica MDP0000300532 I 0.000
MDP0000307943 Malus domestica MDP0000307943 I 0.000
MDP0000320322 Malus domestica MDP0000320322 I 0.000
MDP0000320524 Malus domestica MDP0000320524 I 0.000
MDP0000536881 Malus domestica MDP0000536881 I 0.000
orange1.1g015258m.g Citrus sinensis orange1.1g015258m.g I 0.000
orange1.1g038233m.g Citrus sinensis orange1.1g038233m.g I 0.000
orange1.1g045786m.g Citrus sinensis orange1.1g045786m.g I 0.000
Pavir.Eb01160 Panicum virgatum Pavir.Eb01160 I 0.000
Pavir.Eb03507 Panicum virgatum Pavir.Eb03507 I 0.000
SapurV1A.0018s0400 Salix purpurea SapurV1A.0018s0400 I 0.000
SapurV1A.0079s0330 Salix purpurea SapurV1A.0079s0330 I 0.000
SapurV1A.0189s0240 Salix purpurea SapurV1A.0189s0240 I 0.000
SapurV1A.0196s0260 Salix purpurea SapurV1A.0196s0260 I 0.000
SapurV1A.1761s0020 Salix purpurea SapurV1A.1761s0020 I 0.000
Thhalv10014082m.g Eutrema salsugineum Thhalv10014082m.g I 0.000
Thhalv10021187m.g Eutrema salsugineum Thhalv10021187m.g I 0.000
PK13754.1 Cannabis sativa PK13754.1 I 0.000
PK21698.1 Cannabis sativa PK21698.1 I 0.000
chr1.CM0009.80.nd Lotus japonicus chr1.CM0009.80.nd I 0.000
PDK_20s1462851g003 Phoenix dactylifera PDK_20s1462851g003 I 0.000
OB05G28710 Oryza brachyantha OB05G28710 N 0.000
Traes_1AS_412B31FC1 Triticum aestivum Traes_1AS_412B31FC1 N 0.000
Traes_1BS_E3FCA98E3 Triticum aestivum Traes_1BS_E3FCA98E3 N 0.000