A4F248_TOBAC (Nicotiana tabacum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 A4F248_TOBAC T006659_2.00 HughesLab (2013-Jun-13)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
A4F248_TOBAC
M09725_2.00		 Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.858 0.960
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.780 0.860
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.780 0.860
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.780 0.860
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.767 0.820
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.760 0.820
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.760 0.820
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.760 0.820
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.752 0.780
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.726 0.760
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.726 0.760
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.721 0.740
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.718 0.760
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.718 0.760
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.715 0.760
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.715 0.760
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.715 0.760
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.703 0.780
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.703 0.780
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.698 0.820
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.698 0.820
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.698 0.820
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.698 0.820
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.696 0.720
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.692 0.760
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.688 0.740
ERF10
M06562_2.00 		Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN
NRYGGCGGCGRHDDNDNNDNN		 Dap-seq
OMalley et al.(2016)
ERF10_col_a 		0.688 0.740
ERF10
M06563_2.00 		Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN
NNNNNNHDDYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF10_colamp_a 		0.688 0.740
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.687 0.740
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.687 0.740
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.687 0.740
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.685 0.720
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.683 0.680
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.683 0.720
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.683 0.720
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.682 0.720
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.682 0.720
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.682 0.720
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.681 0.740
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.681 0.740
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.681 0.740
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.681 0.740
EREBP1
M09708_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EREBP1_01 		0.680 0.720
ERF106
M01628_2.00 		Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN		 PBM
Weirauch et al.(2014)
pTH7426 		0.678 0.680
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
A4F248_TOBAC AP2 153 204

Links

Other AP2 family TFs
Other Nicotiana tabacum TFs

1253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CMTA3 Arabidopsis thaliana AT2G22300 D 0.000
EICBP.B Arabidopsis thaliana AT5G09410 D 0.000
CMTA2 Arabidopsis thaliana AT5G64220 D 0.000
AMTR_s00038p00173360 Amborella trichopoda AMTR_s00038p00173360 I 0.000
AMTR_s00045p00052450 Amborella trichopoda AMTR_s00045p00052450 I 0.000
BGIOSGA011302 Oryza indica BGIOSGA011302 I 0.000
BGIOSGA012779 Oryza indica BGIOSGA012779 I 0.000
BGIOSGA023886 Oryza indica BGIOSGA023886 I 0.000
BGIOSGA032809 Oryza indica BGIOSGA032809 I 0.000
Bo4g136970 Brassica oleracea Bo4g136970 I 0.000
Bo4g149510 Brassica oleracea Bo4g149510 I 0.000
Bo9g018010 Brassica oleracea Bo9g018010 I 0.000
Bo9g174050 Brassica oleracea Bo9g174050 I 0.000
Bra009382 Brassica rapa Bra009382 I 0.000
Bra030248 Brassica rapa Bra030248 I 0.000
Bra037769 Brassica rapa Bra037769 I 0.000
Bra038534 Brassica rapa Bra038534 I 0.000
BRADI1G21372 Brachypodium distachyon BRADI1G21372 I 0.000
BRADI1G60817 Brachypodium distachyon BRADI1G60817 I 0.000
BRADI1G71810 Brachypodium distachyon BRADI1G71810 I 0.000
BRADI3G23800 Brachypodium distachyon BRADI3G23800 I 0.000
F775_11311 Aegilops tauschii F775_11311 I 0.000
F775_29292 Aegilops tauschii F775_29292 I 0.000
CAMTA3 Arabidopsis lyrata fgenesh2_kg.4__153__AT2G22300.2 I 0.000
EICBP.B Arabidopsis lyrata fgenesh2_kg.6__888__AT5G09410.2 I 0.000
GLYMA05G24430 Glycine max GLYMA05G24430 I 0.000
GLYMA05G31190 Glycine max GLYMA05G31190 I 0.000
GLYMA08G07680 Glycine max GLYMA08G07680 I 0.000
GLYMA08G14370 Glycine max GLYMA08G14370 I 0.000
GLYMA08G19101 Glycine max GLYMA08G19101 I 0.000
GLYMA15G05900 Glycine max GLYMA15G05900 I 0.000
GLYMA17G04310 Glycine max GLYMA17G04310 I 0.000
GRMZM2G341747 Zea mays GRMZM2G341747 I 0.000
GRMZM2G431243 Zea mays GRMZM2G431243 I 0.000
GRMZM2G447551 Zea mays GRMZM2G447551 I 0.000
GSMUA_Achr1G21540_001 Musa acuminata GSMUA_Achr1G21540_001 I 0.000
GSMUA_Achr3G08460_001 Musa acuminata GSMUA_Achr3G08460_001 I 0.000
GSMUA_Achr3G21310_001 Musa acuminata GSMUA_Achr3G21310_001 I 0.000
GSMUA_Achr6G10390_001 Musa acuminata GSMUA_Achr6G10390_001 I 0.000
GSMUA_AchrUn_randomG02100_001 Musa acuminata GSMUA_AchrUn_randomG02100_001 I 0.000
GSMUA_AchrUn_randomG08930_001 Musa acuminata GSMUA_AchrUn_randomG08930_001 I 0.000
LPERR03G05920 Leersia perrieri LPERR03G05920 I 0.000
LPERR03G17060 Leersia perrieri LPERR03G17060 I 0.000
LPERR07G19680 Leersia perrieri LPERR07G19680 I 0.000
LPERR10G05550 Leersia perrieri LPERR10G05550 I 0.000
MLOC_38704 Hordeum vulgare MLOC_38704 I 0.000
MLOC_63299 Hordeum vulgare MLOC_63299 I 0.000
MTR_2g008840 Medicago truncatula MTR_2g008840 I 0.000
MTR_4g094215 Medicago truncatula MTR_4g094215 I 0.000
MTR_8g090205 Medicago truncatula MTR_8g090205 I 0.000
OB03G16740 Oryza brachyantha OB03G16740 I 0.000
OB03G29080 Oryza brachyantha OB03G29080 I 0.000
OB07G28190 Oryza brachyantha OB07G28190 I 0.000
OB10G16130 Oryza brachyantha OB10G16130 I 0.000
OBART03G06570 Oryza barthii OBART03G06570 I 0.000
OBART03G19880 Oryza barthii OBART03G19880 I 0.000
OBART07G22710 Oryza barthii OBART07G22710 I 0.000
OBART10G08060 Oryza barthii OBART10G08060 I 0.000
OGLUM03G06680 Oryza glumaepatula OGLUM03G06680 I 0.000
OGLUM03G20490 Oryza glumaepatula OGLUM03G20490 I 0.000
OGLUM07G22660 Oryza glumaepatula OGLUM07G22660 I 0.000
OGLUM10G07770 Oryza glumaepatula OGLUM10G07770 I 0.000
OLONG_001033 Oryza longistaminata OLONG_001033 I 0.000
OLONG_003971 Oryza longistaminata OLONG_003971 I 0.000
OLONG_004418 Oryza longistaminata OLONG_004418 I 0.000
OLONG_018130 Oryza longistaminata OLONG_018130 I 0.000
OMERI03G06500 Oryza meridionalis OMERI03G06500 I 0.000
OMERI03G17850 Oryza meridionalis OMERI03G17850 I 0.000
ONIVA02G06230 Oryza nivara ONIVA02G06230 I 0.000
ONIVA03G21570 Oryza nivara ONIVA03G21570 I 0.000
ONIVA07G22160 Oryza nivara ONIVA07G22160 I 0.000
ONIVA10G07730 Oryza nivara ONIVA10G07730 I 0.000
OPUNC03G18730 Oryza punctata OPUNC03G18730 I 0.000
OPUNC07G21310 Oryza punctata OPUNC07G21310 I 0.000
OPUNC10G06950 Oryza punctata OPUNC10G06950 I 0.000
ORGLA03G0064000 Oryza glaberrima ORGLA03G0064000 I 0.000
ORGLA07G0175700 Oryza glaberrima ORGLA07G0175700 I 0.000
ORGLA10G0066800 Oryza glaberrima ORGLA10G0066800 I 0.000
ORGLA10G0167300 Oryza glaberrima ORGLA10G0167300 I 0.000
ORUFI03G06510 Oryza rufipogon ORUFI03G06510 I 0.000
ORUFI03G20520 Oryza rufipogon ORUFI03G20520 I 0.000
ORUFI07G23760 Oryza rufipogon ORUFI07G23760 I 0.000
ORUFI10G08490 Oryza rufipogon ORUFI10G08490 I 0.000
OS03G0191000 Oryza sativa OS03G0191000 I 0.000
OS10G0375600 Oryza sativa OS10G0375600 I 0.000
POPTR_0005s07660 Populus trichocarpa POPTR_0005s07660 I 0.000
POPTR_0007s05410 Populus trichocarpa POPTR_0007s05410 I 0.000
Sb0012s010230 Sorghum bicolor Sb0012s010230 I 0.000
Sb01g033650 Sorghum bicolor Sb01g033650 I 0.000
Sb01g044480 Sorghum bicolor Sb01g044480 I 0.000
Sb02g039710 Sorghum bicolor Sb02g039710 I 0.000
scaffold_803130.1 Arabidopsis lyrata scaffold_803130.1 I 0.000
SELMODRAFT_413101 Selaginella moellendorffii SELMODRAFT_413101 I 0.000
SELMODRAFT_441667 Selaginella moellendorffii SELMODRAFT_441667 I 0.000
Si028797m.g Setaria italica Si028797m.g I 0.000
Si034046m.g Setaria italica Si034046m.g I 0.000
Si034054m.g Setaria italica Si034054m.g I 0.000
Si034076m.g Setaria italica Si034076m.g I 0.000
Solyc01g105230.2 Solanum lycopersicum Solyc01g105230.2 I 0.000
Solyc04g056270.2 Solanum lycopersicum Solyc04g056270.2 I 0.000
TCM_001108 Theobroma cacao TCM_001108 I 0.000
TCM_007482 Theobroma cacao TCM_007482 I 0.000
TCM_021468 Theobroma cacao TCM_021468 I 0.000
Traes_2AS_506D953C1 Triticum aestivum Traes_2AS_506D953C1 I 0.000
Traes_2DS_D05DC56BD Triticum aestivum Traes_2DS_D05DC56BD I 0.000
Traes_4AL_2F7E6536A Triticum aestivum Traes_4AL_2F7E6536A I 0.000
Traes_4DL_C2F35966E Triticum aestivum Traes_4DL_C2F35966E I 0.000
Traes_5BL_92902F993 Triticum aestivum Traes_5BL_92902F993 I 0.000
TRIUR3_23040 Triticum urartu TRIUR3_23040 I 0.000
TRIUR3_23792 Triticum urartu TRIUR3_23792 I 0.000
VIT_05s0020g00630 Vitis vinifera VIT_05s0020g00630 I 0.000
CAMTA3 Vitis vinifera VIT_07s0141g00250 I 0.000
Ca_05255 Cicer arietinum Ca_05255 I 0.000
Cla013051 Citrullus lanatus Cla013051 I 0.000
Cla018421 Citrullus lanatus Cla018421 I 0.000
Pm002007 Prunus mume Pm002007 I 0.000
Pm008450 Prunus mume Pm008450 I 0.000
28281.m000379 Ricinus communis 28281.m000379 I 0.000
29889.m003372 Ricinus communis 29889.m003372 I 0.000
cassava1518.valid.m1 Manihot esculenta cassava1518.valid.m1 I 0.000
Cucsa.217940 Cucumis sativus Cucsa.217940 I 0.000
gw1.188.72.1 Physcomitrella patens gw1.188.72.1 I 0.000
mgf010601m Mimulus guttatus mgf010601m I 0.000
mgf015897m Mimulus guttatus mgf015897m I 0.000
mgf024932m Mimulus guttatus mgf024932m I 0.000
Aquca_003_00380 Aquilegia coerulea Aquca_003_00380 I 0.000
Aquca_008_00132 Aquilegia coerulea Aquca_008_00132 I 0.000
Aquca_010_00201 Aquilegia coerulea Aquca_010_00201 I 0.000
Bostr.0568s0382 Boechera stricta Bostr.0568s0382 I 0.000
Bostr.13129s0055 Boechera stricta Bostr.13129s0055 I 0.000
Cagra.0248s0103 Capsella grandiflora Cagra.0248s0103 I 0.000
Cagra.1365s0113 Capsella grandiflora Cagra.1365s0113 I 0.000
Cagra.2300s0004 Capsella grandiflora Cagra.2300s0004 I 0.000
Carubv10000120m.g Capsella rubella Carubv10000120m.g I 0.000
Carubv10024738m.g Capsella rubella Carubv10024738m.g I 0.000
Carubv10025787m.g Capsella rubella Carubv10025787m.g I 0.000
Ciclev10004234m.g Citrus clementina Ciclev10004234m.g I 0.000
Ciclev10024764m.g Citrus clementina Ciclev10024764m.g I 0.000
Eucgr.H04783 Eucalyptus grandis Eucgr.H04783 I 0.000
Eucgr.I02632 Eucalyptus grandis Eucgr.I02632 I 0.000
Eucgr.I02662 Eucalyptus grandis Eucgr.I02662 I 0.000
evm.TU.supercontig_213.9 Carica papaya evm.TU.supercontig_213.9 I 0.000
gene29100-v1.0-hybrid Fragaria vesca gene29100-v1.0-hybrid I 0.000
Gorai.005G220600 Gossypium raimondii Gorai.005G220600 I 0.000
Gorai.008G089900 Gossypium raimondii Gorai.008G089900 I 0.000
Gorai.011G204700 Gossypium raimondii Gorai.011G204700 I 0.000
Gorai.013G061100 Gossypium raimondii Gorai.013G061100 I 0.000
Lus10003405.g Linum usitatissimum Lus10003405.g I 0.000
Lus10041704.g Linum usitatissimum Lus10041704.g I 0.000
MDP0000139862 Malus domestica MDP0000139862 I 0.000
MDP0000290409 Malus domestica MDP0000290409 I 0.000
orange1.1g001365m.g Citrus sinensis orange1.1g001365m.g I 0.000
orange1.1g001406m.g Citrus sinensis orange1.1g001406m.g I 0.000
orange1.1g001759m.g Citrus sinensis orange1.1g001759m.g I 0.000
Pavir.Ba00386 Panicum virgatum Pavir.Ba00386 I 0.000
Pavir.Ia02749 Panicum virgatum Pavir.Ia02749 I 0.000
Pavir.Ia03131 Panicum virgatum Pavir.Ia03131 I 0.000
Pavir.Ib01843 Panicum virgatum Pavir.Ib01843 I 0.000
Pavir.Ib02991 Panicum virgatum Pavir.Ib02991 I 0.000
Pavir.J35200 Panicum virgatum Pavir.J35200 I 0.000
Pavir.J38535 Panicum virgatum Pavir.J38535 I 0.000
SapurV1A.0039s0030 Salix purpurea SapurV1A.0039s0030 I 0.000
SapurV1A.0072s0470 Salix purpurea SapurV1A.0072s0470 I 0.000
SapurV1A.0403s0170 Salix purpurea SapurV1A.0403s0170 I 0.000
Thhalv10000026m.g Eutrema salsugineum Thhalv10000026m.g I 0.000
Thhalv10003564m.g Eutrema salsugineum Thhalv10003564m.g I 0.000
Thhalv10012552m.g Eutrema salsugineum Thhalv10012552m.g I 0.000
PK04004.1 Cannabis sativa PK04004.1 I 0.000
PK28233.1 Cannabis sativa PK28233.1 I 0.000
chr4.CM0182.510.nc Lotus japonicus chr4.CM0182.510.nc I 0.000
chr4.LjT13D08.100.nd Lotus japonicus chr4.LjT13D08.100.nd I 0.000
chr6.CM0314.100.nd Lotus japonicus chr6.CM0314.100.nd I 0.000