Ciclev10027171m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10027171m.g T008063_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.687 0.725
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.687 0.725
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.683 0.706
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.683 0.706
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.678 0.706
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027171m AP2 166 217

Links

Other AP2 family TFs
Other Citrus clementina TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPSIG00000008556 Pelodiscus sinensis ENSPSIG00000008556 N 0.000
Sall3 Mus musculus ENSMUSG00000024565 N 0.000
SALL1 Ornithorhynchus anatinus ENSOANG00000013399 N 0.000
SALL3 Oryctolagus cuniculus ENSOCUG00000029398 N 0.000
ENSONIG00000007305 Oreochromis niloticus ENSONIG00000007305 N 0.000
sall3a Oryzias latipes ENSORLG00000020718 N 0.000
ENSPANG00000006485 Papio anubis ENSPANG00000006485 N 0.000
ENSPFOG00000019127 Poecilia formosa ENSPFOG00000019127 N 0.000
ENSPPYG00000009253 Pongo abelii ENSPPYG00000009253 N 0.000
ENSMPUG00000016646 Mustela putorius furo ENSMPUG00000016646 N 0.000
SALL3 Pan troglodytes ENSPTRG00000010126 N 0.000
ENSSHAG00000015872 Sarcophilus harrisii ENSSHAG00000015872 N 0.000
ENSSTOG00000004145 Ictidomys tridecemlineatus ENSSTOG00000004145 N 0.000
sall3b Takifugu rubripes ENSTRUG00000003369 N 0.000
sall1a Takifugu rubripes ENSTRUG00000008950 N 0.000
SALL3 Tursiops truncatus ENSTTRG00000004958 N 0.000
ENSXMAG00000009081 Xiphophorus maculatus ENSXMAG00000009081 N 0.000
Pvit_05136 Pogona vitticeps Pvit_05136 N 0.000
ENSFALG00000013343 Ficedula albicollis ENSFALG00000013343 N 0.000
ENSAMEG00000010206 Ailuropoda melanoleuca ENSAMEG00000010206 N 0.000
ENSAPLG00000013214 Anas platyrhynchos ENSAPLG00000013214 N 0.000
SALL3 Canis familiaris ENSCAFG00000000013 N 0.000
SALL3 Callithrix jacchus ENSCJAG00000007332 N 0.000
SALL3 Cavia porcellus ENSCPOG00000008546 N 0.000
sall3b Danio rerio ENSDARG00000057586 N 0.000
sall3a Danio rerio ENSDARG00000079613 N 0.000
SALL3 Equus caballus ENSECAG00000015414 N 0.000
SALL3 Anolis carolinensis ENSACAG00000000478 N 0.000
SALL3 Homo sapiens ENSG00000256463 N 0.000
sall3a Gasterosteus aculeatus ENSGACG00000005503 N 0.000
ENSGALG00000012657 Gallus gallus ENSGALG00000012657 N 0.000
SALL3 Gorilla gorilla ENSGGOG00000008127 N 0.000
ENSLOCG00000007831 Lepisosteus oculatus ENSLOCG00000007831 N 0.000
SALL3 Meleagris gallopavo ENSMGAG00000002297 N 0.000
SALL3 Macaca mulatta ENSMMUG00000000286 N 0.000
SALL3 Monodelphis domestica ENSMODG00000012231 N 0.000