MDP0000172804 (Malus domestica)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 MDP0000172804 T008994_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.685 0.922
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.685 0.922
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000172804 AP2 28 79

Links

Other AP2 family TFs
Other Malus domestica TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.685
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.685
TCM_011632 Theobroma cacao TCM_011632 I 0.678
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.685
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.681
mgf022665m Mimulus guttatus mgf022665m I 0.682
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.698
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.699
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.678
30084.m000185 Ricinus communis 30084.m000185 I 0.685
Pm025326 Prunus mume Pm025326 I 0.685
Pm000004 Prunus mume Pm000004 I 0.732
Cla012318 Citrullus lanatus Cla012318 I 0.698
Ca_08232 Cicer arietinum Ca_08232 I 0.685
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.685
TCM_040015 Theobroma cacao TCM_040015 I 0.685
TCM_025913 Theobroma cacao TCM_025913 I 0.685
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.685
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.699
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.680
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.685
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.685
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.681
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.699
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.699
MDP0000525933 Malus domestica MDP0000525933 I 0.732
MDP0000177547 Malus domestica MDP0000177547 I 0.685
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.685
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.685
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.678
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.702
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.681
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.685
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.699
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.687
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.685
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.685
OBART07G06690 Oryza barthii OBART07G06690 I 0.685
OB07G15030 Oryza brachyantha OB07G15030 I 0.685
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.685
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.685
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.685
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.685
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.708
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.685
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.708
Bra020063 Brassica rapa Bra020063 I 0.685
Bra006518 Brassica rapa Bra006518 I 0.685
Bra002262 Brassica rapa Bra002262 I 0.685
Bo9g152440 Brassica oleracea Bo9g152440 I 0.685
Bo3g013830 Brassica oleracea Bo3g013830 I 0.685
Bo2g018360 Brassica oleracea Bo2g018360 I 0.685
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.685
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.685
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.693
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.692
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.685
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.682
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.732
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.685
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.708
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.685
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.685
OS07G0204000 Oryza sativa OS07G0204000 I 0.685
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.685
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.685
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.680
Si033237m.g Setaria italica Si033237m.g I 0.682
PGSC0003DMG400008352 Solanum tuberosum PGSC0003DMG400008352 N 0.692
Solyc10g078610.1 Solanum lycopersicum Solyc10g078610.1 N 0.708