orange1.1g013225m.g (Citrus sinensis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 orange1.1g013225m.g T009209_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.797 0.880
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.797 0.880
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.797 0.880
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.797 0.880
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.786 0.840
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.786 0.840
ABR1
M01051_2.00 		Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN		 PBM
Sullivan et al.(2014)
pTH7383 		0.733 0.880
ABR1
M06684_2.00 		Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ABR1_col_a 		0.733 0.880
ABR1
M06685_2.00 		Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ABR1_colamp_a 		0.733 0.880
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.729 0.820
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.727 0.840
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.727 0.840
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.727 0.840
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.723 0.780
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.711 0.820
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.706 0.800
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.689 0.780
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.689 0.780
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.689 0.780
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.684 0.760
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.679 0.700
A5JTT1_WHEAT
M09700_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_01 		0.679 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g013225m AP2 213 264
orange1.1g013481m AP2 208 259
orange1.1g014123m AP2 196 247

Links

Other AP2 family TFs
Other Citrus sinensis TFs

622 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TBX19 Homo sapiens ENSG00000143178 D
T Homo sapiens ENSG00000164458 D
T Mus musculus ENSMUSG00000062327 D
BGIBMGA000322 Bombyx mori BGIBMGA000322 I
CGI_10018059 Crassostrea gigas CGI_10018059 I
DAPPUDRAFT_44582 Daphnia pulex DAPPUDRAFT_44582 I
T Anolis carolinensis ENSACAG00000003467 I
TBX19 Anolis carolinensis ENSACAG00000010693 I
ENSAMEG00000004326 Ailuropoda melanoleuca ENSAMEG00000004326 I
ENSAMXG00000003991 Astyanax mexicanus ENSAMXG00000003991 I
ENSAMXG00000013638 Astyanax mexicanus ENSAMXG00000013638 I
ENSAPLG00000010506 Anas platyrhynchos ENSAPLG00000010506 I
TBX19 Bos taurus ENSBTAG00000002952 I
T Bos taurus ENSBTAG00000018681 I
T Canis familiaris ENSCAFG00000000807 I
TBX19 Canis familiaris ENSCAFG00000015268 I
TBX19 Choloepus hoffmanni ENSCHOG00000010387 I
T Callithrix jacchus ENSCJAG00000012508 I
TBX19 Callithrix jacchus ENSCJAG00000016812 I
T Cavia porcellus ENSCPOG00000001358 I
TBX19 Cavia porcellus ENSCPOG00000012456 I
ENSCSAG00000011055 Chlorocebus sabaeus ENSCSAG00000011055 I
ENSCSAG00000012200 Chlorocebus sabaeus ENSCSAG00000012200 I
tb Danio rerio ENSDARG00000039806 I
tbx19 Danio rerio ENSDARG00000079187 I
ta Danio rerio ENSDARG00000101576 I
TBX19 Dasypus novemcinctus ENSDNOG00000015810 I
ENSDNOG00000016178 Dasypus novemcinctus ENSDNOG00000016178 I
Tbx19 Dipodomys ordii ENSDORG00000014860 I
T Equus caballus ENSECAG00000007994 I
TBX19 Equus caballus ENSECAG00000010186 I
ENSFALG00000005706 Ficedula albicollis ENSFALG00000005706 I
TBX19 Felis catus ENSFCAG00000015047 I
tb Gasterosteus aculeatus ENSGACG00000005258 I
T Gallus gallus ENSGALG00000011489 I
TBX19 Gallus gallus ENSGALG00000015244 I
TBX19 Gorilla gorilla ENSGGOG00000001338 I
T Gorilla gorilla ENSGGOG00000007693 I
ENSGMOG00000017391 Gadus morhua ENSGMOG00000017391 I
ENSGMOG00000018941 Gadus morhua ENSGMOG00000018941 I
ENSLACG00000011042 Latimeria chalumnae ENSLACG00000011042 I
ENSLACG00000015449 Latimeria chalumnae ENSLACG00000015449 I
TBX19 Loxodonta africana ENSLAFG00000011227 I
T Loxodonta africana ENSLAFG00000012505 I
ENSLOCG00000003838 Lepisosteus oculatus ENSLOCG00000003838 I
ENSLOCG00000010586 Lepisosteus oculatus ENSLOCG00000010586 I
ENSLOCG00000016526 Lepisosteus oculatus ENSLOCG00000016526 I
TBX19 Microcebus murinus ENSMICG00000007817 I
TBX19 Myotis lucifugus ENSMLUG00000011933 I
SFT2D2 Macaca mulatta ENSMMUG00000005283 I
T Macaca mulatta ENSMMUG00000017047 I
TBX19 Monodelphis domestica ENSMODG00000002921 I
T Monodelphis domestica ENSMODG00000006318 I
ENSMPUG00000000522 Mustela putorius furo ENSMPUG00000000522 I
Tbx19 Mus musculus ENSMUSG00000026572 I
ENSNLEG00000011552 Nomascus leucogenys ENSNLEG00000011552 I
ENSNLEG00000014917 Nomascus leucogenys ENSNLEG00000014917 I
T Ornithorhynchus anatinus ENSOANG00000012289 I
ENSOARG00000004863 Ovis aries ENSOARG00000004863 I
ENSOARG00000012617 Ovis aries ENSOARG00000012617 I
T Oryctolagus cuniculus ENSOCUG00000000660 I
TBX19 Oryctolagus cuniculus ENSOCUG00000014555 I
TBX19 Otolemur garnettii ENSOGAG00000004458 I
T Otolemur garnettii ENSOGAG00000007863 I
ENSONIG00000007611 Oreochromis niloticus ENSONIG00000007611 I
ENSONIG00000008985 Oreochromis niloticus ENSONIG00000008985 I
ENSONIG00000009906 Oreochromis niloticus ENSONIG00000009906 I
T Ochotona princeps ENSOPRG00000003376 I
TBX19 Ochotona princeps ENSOPRG00000016564 I
tb Oryzias latipes ENSORLG00000011262 I
me-t Oryzias latipes ENSORLG00000014067 I
ENSPANG00000005068 Papio anubis ENSPANG00000005068 I
ENSPFOG00000002451 Poecilia formosa ENSPFOG00000002451 I
ENSPFOG00000006034 Poecilia formosa ENSPFOG00000006034 I
ENSPFOG00000016071 Poecilia formosa ENSPFOG00000016071 I
ENSPPYG00000017163 Pongo abelii ENSPPYG00000017163 I
ENSPSIG00000005649 Pelodiscus sinensis ENSPSIG00000005649 I
ENSPSIG00000015509 Pelodiscus sinensis ENSPSIG00000015509 I
TBX19 Pan troglodytes ENSPTRG00000001647 I
T Pan troglodytes ENSPTRG00000018789 I
T Rattus norvegicus ENSRNOG00000012229 I
ENSSHAG00000018904 Sarcophilus harrisii ENSSHAG00000018904 I
ENSSHAG00000018940 Sarcophilus harrisii ENSSHAG00000018940 I
TBX19 Sus scrofa ENSSSCG00000006299 I
ENSSTOG00000019913 Ictidomys tridecemlineatus ENSSTOG00000019913 I
ENSSTOG00000028238 Ictidomys tridecemlineatus ENSSTOG00000028238 I
T Taeniopygia guttata ENSTGUG00000009448 I
TBX19 Taeniopygia guttata ENSTGUG00000013434 I
ta Tetraodon nigroviridis ENSTNIG00000005634 I
tbx19 Tetraodon nigroviridis ENSTNIG00000006586 I
tb Tetraodon nigroviridis ENSTNIG00000016613 I
tbx19 Takifugu rubripes ENSTRUG00000005718 I
tb Takifugu rubripes ENSTRUG00000011958 I
ta Takifugu rubripes ENSTRUG00000012130 I
T Tursiops truncatus ENSTTRG00000016665 I
TBX19 Vicugna pacos ENSVPAG00000000446 I
ENSXMAG00000006226 Xiphophorus maculatus ENSXMAG00000006226 I
ENSXMAG00000011123 Xiphophorus maculatus ENSXMAG00000011123 I
ENSXMAG00000012033 Xiphophorus maculatus ENSXMAG00000012033 I
LotgiG154800 Lottia gigantea LotgiG154800 I
MCINX002868 Melitaea cinxia MCINX002868 I
NV14821 Nasonia vitripennis NV14821 I
PHUM392580 Pediculus humanus PHUM392580 I
RPRC001186 Rhodnius prolixus RPRC001186 I
TriadG25521 Trichoplax adhaerens TriadG25521 I
Aan_R012309 Calypte anna Aan_R012309 I
Afo_R013116 Aptenodytes forsteri Afo_R013116 I
Alligator_sinensis_CCG010779.1 Alligator sinensis Alligator_sinensis_CCG010779.1 I
Alligator_sinensis_CCG010961.2 Alligator sinensis Alligator_sinensis_CCG010961.2 I
Alligator_sinensis_CCG019781.1 Alligator sinensis Alligator_sinensis_CCG019781.1 I
Brh_R012030 Buceros rhinoceros Brh_R012030 I
Cflo_04209--XP_396427.2_APIME Camponotus floridanus Cflo_04209--XP_396427.2_APIME I
Cmyd_10017804 Chelonia mydas Cmyd_10017804 I
Cmyd_10020966 Chelonia mydas Cmyd_10020966 I
ENSMMUP00000022430 Macaca fascicularis ENSMMUP00000022430 I
ENSP00000356795-D1 Bos grunniens ENSP00000356795-D1 I
ENSP00000356795 Macaca fascicularis ENSP00000356795 I
Gfo_R000170 Geospiza fortis Gfo_R000170 I
Hsal_03707--XP_396427.2_APIME Harpegnathos saltator Hsal_03707--XP_396427.2_APIME I
Myotis_brandtii_TBX19_10024384 Myotis brandtii Myotis_brandtii_TBX19_10024384 I
Ogr19099 Ophisaurus gracilis Ogr19099 I
Pvit_02210 Pogona vitticeps Pvit_02210 I
Pvit_04554 Pogona vitticeps Pvit_04554 I
estExt_fgenesh2_pg.C_650149 Branchiostoma floridae estExt_fgenesh2_pg.C_650149 I
estExt_GenewiseH_1.C_9340011 Branchiostoma floridae estExt_GenewiseH_1.C_9340011 I
estExt_gwp.C_650221 Branchiostoma floridae estExt_gwp.C_650221 I
estExt_gwp.C_9340008 Branchiostoma floridae estExt_gwp.C_9340008 I
Sakowv30011577m.g Saccoglossus kowalevskii Sakowv30011577m.g I
1XBR_A Xenopus laevis 1XBR_A I
1XBR_B Xenopus laevis 1XBR_B I
CLEC002870 Cimex lectularius CLEC002870 I
SNAPOd2T00000418001 Oikopleura dioica SNAPOd2T00000418001 I
tbxt Xenopus tropicalis XB-GENE-478789 I
t2 Xenopus tropicalis XB-GENE-5981736 I
t2.S Xenopus laevis XB-GENE-5981788 I
tbxt.L Xenopus laevis XB-GENE-6255736 I
tbxt.S Xenopus laevis XB-GENE-865212 I
XP_002164912.1 Hydra magnipapillata XP_002164912.1 I
CapteG149486 Capitella teleta CapteG149486 N
SPU_013015 Strongylocentrotus purpuratus SPU_013015 N