Pavir.Ba00533 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ba00533 T009357_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.718 0.882
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.718 0.882
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00533.1.p AP2 48 99

Links

Other AP2 family TFs
Other Panicum virgatum TFs

185 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.718
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.715
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.681
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.792
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.719
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.682
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.683
Bo2g018360 Brassica oleracea Bo2g018360 I 0.718
Bo3g013830 Brassica oleracea Bo3g013830 I 0.718
Bo9g152440 Brassica oleracea Bo9g152440 I 0.718
Bra002262 Brassica rapa Bra002262 I 0.718
Bra006518 Brassica rapa Bra006518 I 0.718
Bra020063 Brassica rapa Bra020063 I 0.718
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.798
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.677
F775_02727 Aegilops tauschii F775_02727 I 0.683
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.685
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.718
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.692
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.683
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.683
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.718
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.686
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.805
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.770
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.683
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.804
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.683
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.719
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.719
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.764
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.689
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.792
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.683
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.683
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.681
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.718
OB07G15030 Oryza brachyantha OB07G15030 I 0.719
OBART07G06690 Oryza barthii OBART07G06690 I 0.719
OBART07G19610 Oryza barthii OBART07G19610 I 0.792
OBART12G17080 Oryza barthii OBART12G17080 I 0.683
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.719
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.792
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.683
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.719
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.792
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.684
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.683
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.719
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.792
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.682
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.683
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.718
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.792
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.684
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.683
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.719
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.792
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.683
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.719
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.792
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.684
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.683
OS07G0204000 Oryza sativa OS07G0204000 I 0.719
OS07G0575000 Oryza sativa OS07G0575000 I 0.792
OS12G0582900 Oryza sativa OS12G0582900 I 0.683
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.683
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.685
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.692
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.718
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.718
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.680
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.683
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.718
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.680
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.683
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.707
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.686
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.716
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.683
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.718
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.689
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.689
Si024417m.g Setaria italica Si024417m.g I 0.686
Si030686m.g Setaria italica Si030686m.g I 0.810
Si032213m.g Setaria italica Si032213m.g I 0.679
Si033237m.g Setaria italica Si033237m.g I 0.716
Si038848m.g Setaria italica Si038848m.g I 0.683
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.685
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.692
TCM_005425 Theobroma cacao TCM_005425 I 0.680
TCM_011632 Theobroma cacao TCM_011632 I 0.685
TCM_018659 Theobroma cacao TCM_018659 I 0.683
TCM_025913 Theobroma cacao TCM_025913 I 0.718
TCM_040015 Theobroma cacao TCM_040015 I 0.719
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.792
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.683
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.718
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.683
Ca_08232 Cicer arietinum Ca_08232 I 0.718
Ca_10494 Cicer arietinum Ca_10494 I 0.683
Cla010474 Citrullus lanatus Cla010474 I 0.686
Cla012318 Citrullus lanatus Cla012318 I 0.705
Pm000004 Prunus mume Pm000004 I 0.707
Pm008788 Prunus mume Pm008788 I 0.680
Pm015931 Prunus mume Pm015931 I 0.683
Pm025326 Prunus mume Pm025326 I 0.718
29635.m000461 Ricinus communis 29635.m000461 I 0.683
29813.m001543 Ricinus communis 29813.m001543 I 0.681
30084.m000185 Ricinus communis 30084.m000185 I 0.718
30174.m008961 Ricinus communis 30174.m008961 I 0.683
30174.m009031 Ricinus communis 30174.m009031 I 0.693
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.686
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.712
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.680
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.681
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.679
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.709
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.687
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.686
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.705
mgf018851m Mimulus guttatus mgf018851m I 0.680
mgf022665m Mimulus guttatus mgf022665m I 0.715
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.681
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.722
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.718
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.718
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.718
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.683
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.706
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.680
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.681
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.710
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.708
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.683
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.718
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.683
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.723
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.680
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.704
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.683
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.680
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.685
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.718
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.686
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.706
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.686
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.706
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.722
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.680
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.685
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.685
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.724
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.681
MDP0000133476 Malus domestica MDP0000133476 I 0.680
MDP0000138669 Malus domestica MDP0000138669 I 0.680
MDP0000177547 Malus domestica MDP0000177547 I 0.718
MDP0000276536 Malus domestica MDP0000276536 I 0.683
MDP0000525933 Malus domestica MDP0000525933 I 0.707
MDP0000551969 Malus domestica MDP0000551969 I 0.683
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.706
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.680
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.706
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.681
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.683
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.679
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.715
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.713
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.686
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.686
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.686
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.810
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.686
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.686
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.692
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.683
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.718
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.709
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.680
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.718
PK13330.1 Cannabis sativa PK13330.1 I 0.683
PK25269.1 Cannabis sativa PK25269.1 I 0.688
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.718
POPTR_0002s15480 Populus trichocarpa POPTR_0002s15480 N 0.720
chr1.CM0284.80.nd Lotus japonicus chr1.CM0284.80.nd N 0.715