Pavir.Ga01095 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ga01095 T009467_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.764 0.920
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.764 0.920
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.756 0.920
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.756 0.920
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.734 0.880
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.734 0.880
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.734 0.880
Q8LKX0_MAIZE
M09722_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DBF2_01 		0.728 0.920
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.712 0.880
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.712 0.880
ERF039
M01620_2.00 		Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH8101 		0.683 0.880
ERF039
M06635_2.00 		Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND		 Dap-seq
OMalley et al.(2016)
At4g16750_col_a 		0.683 0.880
ERF039
M06636_2.00 		Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a 		0.683 0.880
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.683 0.880
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.683 0.880
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.683 0.880
ERF038
M06608_2.00 		Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF38_col_a 		0.683 0.860
AT3G16280
M06618_2.00 		Arabidopsis thaliana
NDNCACCGACANHN
NDNTGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
AT3G16280_col_a 		0.679 0.840
AT3G16280
M06619_2.00 		Arabidopsis thaliana
BCACCGACAHWNNN
NNNWDTGTCGGTGV		 Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a 		0.679 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga01095.1.p AP2 118 169

Links

Other AP2 family TFs
Other Panicum virgatum TFs

405 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TBX21 Homo sapiens ENSG00000073861 D 0.000
TBR1 Homo sapiens ENSG00000136535 D 0.000
EOMES Homo sapiens ENSG00000163508 D 0.000
Tbx21 Mus musculus ENSMUSG00000001444 D 0.000
Eomes Mus musculus ENSMUSG00000032446 D 0.000
Tbr1 Mus musculus ENSMUSG00000035033 D 0.000
A0A075Q982_PATMI Patiria miniata A0A075Q982_PATMI D 0.000
EOMES Anolis carolinensis ENSACAG00000014201 I 0.000
ENSAMEG00000004661 Ailuropoda melanoleuca ENSAMEG00000004661 I 0.000
ENSAMEG00000012360 Ailuropoda melanoleuca ENSAMEG00000012360 I 0.000
ENSAMEG00000012731 Ailuropoda melanoleuca ENSAMEG00000012731 I 0.000
ENSAMXG00000009990 Astyanax mexicanus ENSAMXG00000009990 I 0.000
ENSAMXG00000010492 Astyanax mexicanus ENSAMXG00000010492 I 0.000
ENSAMXG00000012247 Astyanax mexicanus ENSAMXG00000012247 I 0.000
TBX21 Bos taurus ENSBTAG00000014199 I 0.000
EOMES Bos taurus ENSBTAG00000016920 I 0.000
TBR1 Bos taurus ENSBTAG00000021692 I 0.000
EOMES Canis familiaris ENSCAFG00000005510 I 0.000
TBR1 Canis familiaris ENSCAFG00000009984 I 0.000
TBX21 Canis familiaris ENSCAFG00000016705 I 0.000
EOMES Callithrix jacchus ENSCJAG00000004263 I 0.000
TBR1 Callithrix jacchus ENSCJAG00000005603 I 0.000
TBX21 Callithrix jacchus ENSCJAG00000007796 I 0.000
EOMES Cavia porcellus ENSCPOG00000004381 I 0.000
ENSCPOG00000005881 Cavia porcellus ENSCPOG00000005881 I 0.000
TBX21 Cavia porcellus ENSCPOG00000026273 I 0.000
ENSCSAG00000002587 Chlorocebus sabaeus ENSCSAG00000002587 I 0.000
ENSCSAG00000009676 Chlorocebus sabaeus ENSCSAG00000009676 I 0.000
ENSCSAG00000015663 Chlorocebus sabaeus ENSCSAG00000015663 I 0.000
tbx21 Danio rerio ENSDARG00000004473 I 0.000
tbr1b Danio rerio ENSDARG00000004712 I 0.000
eomesa Danio rerio ENSDARG00000006640 I 0.000
tbr1a Danio rerio ENSDARG00000076259 I 0.000
eomesb Danio rerio ENSDARG00000104243 I 0.000
TBR1 Dasypus novemcinctus ENSDNOG00000009816 I 0.000
Tbx21 Dipodomys ordii ENSDORG00000013302 I 0.000
Eomes Dipodomys ordii ENSDORG00000016346 I 0.000
ENSECAG00000002502 Equus caballus ENSECAG00000002502 I 0.000
EOMES Equus caballus ENSECAG00000021052 I 0.000
EOMES Erinaceus europaeus ENSEEUG00000005958 I 0.000
ENSFALG00000004466 Ficedula albicollis ENSFALG00000004466 I 0.000
ENSFALG00000009181 Ficedula albicollis ENSFALG00000009181 I 0.000
EOMES Felis catus ENSFCAG00000003602 I 0.000
TBX21 Felis catus ENSFCAG00000010607 I 0.000
TBR1 Felis catus ENSFCAG00000025073 I 0.000
eomesa Gasterosteus aculeatus ENSGACG00000003160 I 0.000
tbr1b Gasterosteus aculeatus ENSGACG00000005648 I 0.000
eomesb Gasterosteus aculeatus ENSGACG00000006345 I 0.000
EOMES Gallus gallus ENSGALG00000027247 I 0.000
TBX21 Gorilla gorilla ENSGGOG00000002208 I 0.000
EOMES Gorilla gorilla ENSGGOG00000008358 I 0.000
TBR1 Gorilla gorilla ENSGGOG00000015752 I 0.000
ENSGMOG00000002634 Gadus morhua ENSGMOG00000002634 I 0.000
ENSGMOG00000003675 Gadus morhua ENSGMOG00000003675 I 0.000
ENSGMOG00000014981 Gadus morhua ENSGMOG00000014981 I 0.000
ENSLACG00000003893 Latimeria chalumnae ENSLACG00000003893 I 0.000
ENSLACG00000016985 Latimeria chalumnae ENSLACG00000016985 I 0.000
EOMES Loxodonta africana ENSLAFG00000004142 I 0.000
TBR1 Loxodonta africana ENSLAFG00000011541 I 0.000
ENSLOCG00000002398 Lepisosteus oculatus ENSLOCG00000002398 I 0.000
ENSLOCG00000008583 Lepisosteus oculatus ENSLOCG00000008583 I 0.000
ENSLOCG00000013335 Lepisosteus oculatus ENSLOCG00000013335 I 0.000
ENSMICG00000015729 Microcebus murinus ENSMICG00000015729 I 0.000
EOMES Myotis lucifugus ENSMLUG00000001462 I 0.000
TBR1 Myotis lucifugus ENSMLUG00000006008 I 0.000
TBX21 Myotis lucifugus ENSMLUG00000014542 I 0.000
ENSMMUG00000001904 Macaca mulatta ENSMMUG00000001904 I 0.000
TBX21 Macaca mulatta ENSMMUG00000007098 I 0.000
TBR1 Macaca mulatta ENSMMUG00000011911 I 0.000
TBR1 Monodelphis domestica ENSMODG00000005353 I 0.000
ENSMODG00000012526 Monodelphis domestica ENSMODG00000012526 I 0.000
ENSMPUG00000000551 Mustela putorius furo ENSMPUG00000000551 I 0.000
ENSMPUG00000011981 Mustela putorius furo ENSMPUG00000011981 I 0.000
ENSMPUG00000015272 Mustela putorius furo ENSMPUG00000015272 I 0.000
ENSNLEG00000001655 Nomascus leucogenys ENSNLEG00000001655 I 0.000
ENSNLEG00000002040 Nomascus leucogenys ENSNLEG00000002040 I 0.000
ENSNLEG00000004050 Nomascus leucogenys ENSNLEG00000004050 I 0.000
EOMES Ornithorhynchus anatinus ENSOANG00000012619 I 0.000
ENSOARG00000006620 Ovis aries ENSOARG00000006620 I 0.000
ENSOARG00000008340 Ovis aries ENSOARG00000008340 I 0.000
ENSOARG00000014467 Ovis aries ENSOARG00000014467 I 0.000
ENSOCUG00000000451 Oryctolagus cuniculus ENSOCUG00000000451 I 0.000
TBR1 Oryctolagus cuniculus ENSOCUG00000005884 I 0.000
TBX21 Oryctolagus cuniculus ENSOCUG00000012907 I 0.000
TBR1 Otolemur garnettii ENSOGAG00000004936 I 0.000
TBX21 Otolemur garnettii ENSOGAG00000006160 I 0.000
EOMES Otolemur garnettii ENSOGAG00000030966 I 0.000
ENSONIG00000007180 Oreochromis niloticus ENSONIG00000007180 I 0.000
ENSONIG00000008933 Oreochromis niloticus ENSONIG00000008933 I 0.000
ENSONIG00000018223 Oreochromis niloticus ENSONIG00000018223 I 0.000
ENSONIG00000019678 Oreochromis niloticus ENSONIG00000019678 I 0.000
TBR1 Ochotona princeps ENSOPRG00000005150 I 0.000
eomesa Oryzias latipes ENSORLG00000002320 I 0.000
eomesb Oryzias latipes ENSORLG00000005393 I 0.000
tbr1b Oryzias latipes ENSORLG00000016828 I 0.000
ENSPANG00000011539 Papio anubis ENSPANG00000011539 I 0.000
ENSPANG00000018688 Papio anubis ENSPANG00000018688 I 0.000
EOMES Procavia capensis ENSPCAG00000013650 I 0.000
ENSPFOG00000006471 Poecilia formosa ENSPFOG00000006471 I 0.000
ENSPFOG00000017461 Poecilia formosa ENSPFOG00000017461 I 0.000
ENSPFOG00000017938 Poecilia formosa ENSPFOG00000017938 I 0.000
ENSPFOG00000018019 Poecilia formosa ENSPFOG00000018019 I 0.000
ENSPMAG00000003985 Petromyzon marinus ENSPMAG00000003985 I 0.000
ENSPPYG00000008879 Pongo abelii ENSPPYG00000008879 I 0.000
ENSPPYG00000012882 Pongo abelii ENSPPYG00000012882 I 0.000
ENSPPYG00000014055 Pongo abelii ENSPPYG00000014055 I 0.000
ENSPSIG00000004373 Pelodiscus sinensis ENSPSIG00000004373 I 0.000
ENSPSIG00000005360 Pelodiscus sinensis ENSPSIG00000005360 I 0.000
TBX21 Pan troglodytes ENSPTRG00000009335 I 0.000
TBR1 Pan troglodytes ENSPTRG00000012576 I 0.000
EOMES Pan troglodytes ENSPTRG00000014705 I 0.000
TBX21 Pteropus vampyrus ENSPVAG00000004921 I 0.000
EOMES Pteropus vampyrus ENSPVAG00000009999 I 0.000
Tbr1 Rattus norvegicus ENSRNOG00000005049 I 0.000
Tbx21 Rattus norvegicus ENSRNOG00000009427 I 0.000
ENSSHAG00000016616 Sarcophilus harrisii ENSSHAG00000016616 I 0.000
ENSSHAG00000017378 Sarcophilus harrisii ENSSHAG00000017378 I 0.000
ENSSHAG00000018315 Sarcophilus harrisii ENSSHAG00000018315 I 0.000
ENSSSCG00000011219 Sus scrofa ENSSSCG00000011219 I 0.000
TBX21 Sus scrofa ENSSSCG00000017517 I 0.000
ENSSSCG00000022626 Sus scrofa ENSSSCG00000022626 I 0.000
ENSSTOG00000001626 Ictidomys tridecemlineatus ENSSTOG00000001626 I 0.000
ENSSTOG00000020918 Ictidomys tridecemlineatus ENSSTOG00000020918 I 0.000
ENSSTOG00000023843 Ictidomys tridecemlineatus ENSSTOG00000023843 I 0.000
TBR1 Tupaia belangeri ENSTBEG00000014183 I 0.000
tbx21 Tetraodon nigroviridis ENSTNIG00000010103 I 0.000
tbr1b Tetraodon nigroviridis ENSTNIG00000016497 I 0.000
eomesa Tetraodon nigroviridis ENSTNIG00000017582 I 0.000
eomesb Tetraodon nigroviridis ENSTNIG00000019116 I 0.000
tbr1b Takifugu rubripes ENSTRUG00000005183 I 0.000
eomesa Takifugu rubripes ENSTRUG00000005361 I 0.000
eomesb Takifugu rubripes ENSTRUG00000008966 I 0.000
tbx21 Takifugu rubripes ENSTRUG00000012995 I 0.000
ENSVPAG00000002720 Vicugna pacos ENSVPAG00000002720 I 0.000
ENSXMAG00000000528 Xiphophorus maculatus ENSXMAG00000000528 I 0.000
ENSXMAG00000011427 Xiphophorus maculatus ENSXMAG00000011427 I 0.000
ENSXMAG00000013655 Xiphophorus maculatus ENSXMAG00000013655 I 0.000
ENSXMAG00000014284 Xiphophorus maculatus ENSXMAG00000014284 I 0.000
LotgiG129911 Lottia gigantea LotgiG129911 I 0.000
Alligator_sinensis_CCG012002.1 Alligator sinensis Alligator_sinensis_CCG012002.1 I 0.000
Alligator_sinensis_CCG014450.1 Alligator sinensis Alligator_sinensis_CCG014450.1 I 0.000
Brh_R007719 Buceros rhinoceros Brh_R007719 I 0.000
ENSBTAP00000018875-D1 Bos grunniens ENSBTAP00000018875-D1 I 0.000
ENSP00000177694 Macaca fascicularis ENSP00000177694 I 0.000
ENSP00000374205-D1 Bos grunniens ENSP00000374205-D1 I 0.000
ENSP00000374205 Macaca fascicularis ENSP00000374205 I 0.000
ENSP00000388620-D1 Bos grunniens ENSP00000388620-D1 I 0.000
ENSP00000388620 Macaca fascicularis ENSP00000388620 I 0.000
Myotis_brandtii_KPNB1_10030428 Myotis brandtii Myotis_brandtii_KPNB1_10030428 I 0.000
Myotis_brandtii_SLC4A10_10035570 Myotis brandtii Myotis_brandtii_SLC4A10_10035570 I 0.000
Ogr17175 Ophisaurus gracilis Ogr17175 I 0.000
Pvit_15940 Pogona vitticeps Pvit_15940 I 0.000
Pvit_16634 Pogona vitticeps Pvit_16634 I 0.000
estExt_fgenesh2_kg.C_1840001 Branchiostoma floridae estExt_fgenesh2_kg.C_1840001 I 0.000
fgenesh2_pg.scaffold_55000054 Branchiostoma floridae fgenesh2_pg.scaffold_55000054 I 0.000
Sakowv30002752m.g Saccoglossus kowalevskii Sakowv30002752m.g I 0.000
AAI66068 Xenopus tropicalis AAI66068 I 0.000
tbx21 Xenopus tropicalis XB-GENE-479103 I 0.000
eomes Xenopus tropicalis XB-GENE-479769 I 0.000
eomes.S Xenopus laevis XB-GENE-6487182 I 0.000
eomes.L Xenopus laevis XB-GENE-865305 I 0.000
tbr1 Xenopus tropicalis XB-GENE-942241 I 0.000