Pavir.Ib00527 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ib00527 T009525_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib00527.1.p AP2 70 121

Links

Other AP2 family TFs
Other Panicum virgatum TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC206951.3_FG017 Zea mays AC206951.3_FG017 I 0.716
BGIOSGA003364 Oryza indica BGIOSGA003364 I 0.696
BGIOSGA011326 Oryza indica BGIOSGA011326 I 0.716
BGIOSGA014134 Oryza indica BGIOSGA014134 I 0.679
BGIOSGA032849 Oryza indica BGIOSGA032849 I 0.695
Bo1g129710 Brassica oleracea Bo1g129710 I 0.681
Bra021594 Brassica rapa Bra021594 I 0.704
BRADI1G72450 Brachypodium distachyon BRADI1G72450 I 0.699
BRADI2G11890 Brachypodium distachyon BRADI2G11890 I 0.696
BRADI5G25570 Brachypodium distachyon BRADI5G25570 I 0.695
GLYMA10G04210 Glycine max GLYMA10G04210 I 0.681
GLYMA13G18410 Glycine max GLYMA13G18410 I 0.681
GLYMA19G43815 Glycine max GLYMA19G43815 I 0.686
GRMZM2G025062 Zea mays GRMZM2G025062 I 0.728
GRMZM2G053503 Zea mays GRMZM2G053503 I 0.696
GRMZM2G114820 Zea mays GRMZM2G114820 I 0.688
GRMZM2G169382 Zea mays GRMZM2G169382 I 0.696
GRMZM2G478965 Zea mays GRMZM2G478965 I 0.677
GSMUA_Achr10G09560_001 Musa acuminata GSMUA_Achr10G09560_001 I 0.685
GSMUA_Achr10G19950_001 Musa acuminata GSMUA_Achr10G19950_001 I 0.678
GSMUA_Achr10G31090_001 Musa acuminata GSMUA_Achr10G31090_001 I 0.677
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I 0.684
MLOC_51143 Hordeum vulgare MLOC_51143 I 0.680
MTR_1g069945 Medicago truncatula MTR_1g069945 I 0.681
OBART03G06100 Oryza barthii OBART03G06100 I 0.716
OGLUM03G06100 Oryza glumaepatula OGLUM03G06100 I 0.716
OGLUM04G28860 Oryza glumaepatula OGLUM04G28860 I 0.679
OGLUM10G08400 Oryza glumaepatula OGLUM10G08400 I 0.695
OMERI03G05920 Oryza meridionalis OMERI03G05920 I 0.716
OMERI04G24480 Oryza meridionalis OMERI04G24480 I 0.679
OMERI10G05820 Oryza meridionalis OMERI10G05820 I 0.695
OMERI12G11270 Oryza meridionalis OMERI12G11270 I 0.696
ONIVA03G06110 Oryza nivara ONIVA03G06110 I 0.716
ONIVA04G27460 Oryza nivara ONIVA04G27460 I 0.679
ONIVA10G08250 Oryza nivara ONIVA10G08250 I 0.695
OPUNC01G12900 Oryza punctata OPUNC01G12900 I 0.696
OPUNC03G05900 Oryza punctata OPUNC03G05900 I 0.737
ORGLA01G0108600 Oryza glaberrima ORGLA01G0108600 I 0.696
ORGLA03G0058900 Oryza glaberrima ORGLA03G0058900 I 0.716
ORGLA10G0072500 Oryza glaberrima ORGLA10G0072500 I 0.695
ORUFI04G30650 Oryza rufipogon ORUFI04G30650 I 0.679
ORUFI10G09060 Oryza rufipogon ORUFI10G09060 I 0.695
OS01G0313300 Oryza sativa OS01G0313300 I 0.696
OS03G0183300 Oryza sativa OS03G0183300 I 0.716
OS04G0669200 Oryza sativa OS04G0669200 I 0.679
OS10G0390800 Oryza sativa OS10G0390800 I 0.695
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I 0.686
Sb01g045040 Sorghum bicolor Sb01g045040 I 0.698
Sb02g042760 Sorghum bicolor Sb02g042760 I 0.728
Sb03g012890 Sorghum bicolor Sb03g012890 I 0.696
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I 0.692
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I 0.692
SELMODRAFT_73164 Selaginella moellendorffii SELMODRAFT_73164 I 0.682
SELMODRAFT_73169 Selaginella moellendorffii SELMODRAFT_73169 I 0.682
Si002845m.g Setaria italica Si002845m.g I 0.696
Si031079m.g Setaria italica Si031079m.g I 0.725
Si032815m.g Setaria italica Si032815m.g I 0.677
Si036118m.g Setaria italica Si036118m.g I 0.725
TCM_026233 Theobroma cacao TCM_026233 I 0.689
Traes_2AS_72E9B68D2 Triticum aestivum Traes_2AS_72E9B68D2 I 0.680
Traes_2BS_5E7287209 Triticum aestivum Traes_2BS_5E7287209 I 0.680
TRAES3BF171600010CFD_g Triticum aestivum TRAES3BF171600010CFD_g I 0.696
Traes_4AS_8A64DBE8E Triticum aestivum Traes_4AS_8A64DBE8E I 0.727
Traes_4BL_7EC2BFC7B Triticum aestivum Traes_4BL_7EC2BFC7B I 0.711
Traes_5BL_98D063967 Triticum aestivum Traes_5BL_98D063967 I 0.696
Traes_5DL_41E3B1B23 Triticum aestivum Traes_5DL_41E3B1B23 I 0.696
TRIUR3_28710 Triticum urartu TRIUR3_28710 I 0.677
Ca_07754 Cicer arietinum Ca_07754 I 0.681
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I 0.689
cassava47179.m1 Manihot esculenta cassava47179.m1 I 0.688
e_gw1.60.113.1 Physcomitrella patens e_gw1.60.113.1 I 0.688
mgf018693m Mimulus guttatus mgf018693m I 0.683
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I 0.684
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.691
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I 0.688
Lus10005805.g Linum usitatissimum Lus10005805.g I 0.687
Lus10006796.g Linum usitatissimum Lus10006796.g I 0.687
Lus10021873.g Linum usitatissimum Lus10021873.g I 0.701
MDP0000322279 Malus domestica MDP0000322279 I 0.693
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I 0.684
Pavir.Ba00136 Panicum virgatum Pavir.Ba00136 I 0.725
Pavir.Bb03609 Panicum virgatum Pavir.Bb03609 I 0.725
Pavir.Eb02324 Panicum virgatum Pavir.Eb02324 I 0.696
Pavir.Ia04158 Panicum virgatum Pavir.Ia04158 I 0.717
Pavir.Ib00528 Panicum virgatum Pavir.Ib00528 I 0.727
Pavir.J08480 Panicum virgatum Pavir.J08480 I 0.696
SapurV1A.0233s0360 Salix purpurea SapurV1A.0233s0360 I 0.679
SapurV1A.4312s0010 Salix purpurea SapurV1A.4312s0010 I 0.679
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I 0.681
AC206951.3_FG016 Zea mays AC206951.3_FG016 N 0.773
BGIOSGA012597 Oryza indica BGIOSGA012597 N 0.721
BGIOSGA023726 Oryza indica BGIOSGA023726 N 0.725
LPERR03G05410 Leersia perrieri LPERR03G05410 N 0.707
LPERR03G14670 Leersia perrieri LPERR03G14670 N 0.721
OBART07G26160 Oryza barthii OBART07G26160 N 0.725
OGLUM03G06090 Oryza glumaepatula OGLUM03G06090 N 0.767
OGLUM03G17210 Oryza glumaepatula OGLUM03G17210 N 0.721
OGLUM07G26170 Oryza glumaepatula OGLUM07G26170 N 0.725
OMERI03G15020 Oryza meridionalis OMERI03G15020 N 0.721
OMERI07G22780 Oryza meridionalis OMERI07G22780 N 0.725
ONIVA03G06100 Oryza nivara ONIVA03G06100 N 0.767
ONIVA03G17860 Oryza nivara ONIVA03G17860 N 0.721
ONIVA07G25780 Oryza nivara ONIVA07G25780 N 0.725
OPUNC03G16250 Oryza punctata OPUNC03G16250 N 0.721
OPUNC07G24590 Oryza punctata OPUNC07G24590 N 0.725
ORGLA03G0058800 Oryza glaberrima ORGLA03G0058800 N 0.767
ORGLA03G0161100 Oryza glaberrima ORGLA03G0161100 N 0.721
ORGLA07G0205000 Oryza glaberrima ORGLA07G0205000 N 0.725
ORUFI03G05920 Oryza rufipogon ORUFI03G05920 N 0.767
ORUFI03G17430 Oryza rufipogon ORUFI03G17430 N 0.721
ORUFI07G27120 Oryza rufipogon ORUFI07G27120 N 0.725
OS03G0341000 Oryza sativa OS03G0341000 N 0.721
OS07G0674800 Oryza sativa OS07G0674800 N 0.725
Sb01g045050 Sorghum bicolor Sb01g045050 N 0.798
Si036821m.g Setaria italica Si036821m.g N 0.725
Pavir.J12680 Panicum virgatum Pavir.J12680 N 0.814