Pavir.Ib00528 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ib00528 T009526_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
P93392_TOBAC
M09731_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OPBP1_01 		0.691 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib00528.1.p AP2 92 143

Links

Other AP2 family TFs
Other Panicum virgatum TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
P93392_TOBAC Nicotiana tabacum P93392_TOBAC D 0.691
AC206951.3_FG017 Zea mays AC206951.3_FG017 I 0.748
BGIOSGA003364 Oryza indica BGIOSGA003364 I 0.692
BGIOSGA011326 Oryza indica BGIOSGA011326 I 0.740
BGIOSGA014134 Oryza indica BGIOSGA014134 I 0.688
BRADI1G72450 Brachypodium distachyon BRADI1G72450 I 0.734
BRADI2G11890 Brachypodium distachyon BRADI2G11890 I 0.692
BRADI5G25570 Brachypodium distachyon BRADI5G25570 I 0.694
F775_05346 Aegilops tauschii F775_05346 I 0.684
F775_25471 Aegilops tauschii F775_25471 I 0.681
GLYMA10G04210 Glycine max GLYMA10G04210 I 0.685
GLYMA13G18410 Glycine max GLYMA13G18410 I 0.685
GLYMA19G43815 Glycine max GLYMA19G43815 I 0.687
GRMZM2G025062 Zea mays GRMZM2G025062 I 0.706
GRMZM2G053503 Zea mays GRMZM2G053503 I 0.692
GRMZM2G148333 Zea mays GRMZM2G148333 I 0.693
GRMZM2G169382 Zea mays GRMZM2G169382 I 0.692
GSMUA_Achr10G19950_001 Musa acuminata GSMUA_Achr10G19950_001 I 0.696
GSMUA_Achr4G05520_001 Musa acuminata GSMUA_Achr4G05520_001 I 0.685
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I 0.677
LPERR02G14620 Leersia perrieri LPERR02G14620 I 0.680
MTR_1g043350 Medicago truncatula MTR_1g043350 I 0.680
MTR_1g069945 Medicago truncatula MTR_1g069945 I 0.684
MTR_1g074370 Medicago truncatula MTR_1g074370 I 0.695
OBART03G06100 Oryza barthii OBART03G06100 I 0.740
OGLUM03G06100 Oryza glumaepatula OGLUM03G06100 I 0.740
OGLUM04G28860 Oryza glumaepatula OGLUM04G28860 I 0.688
OMERI03G05920 Oryza meridionalis OMERI03G05920 I 0.740
OMERI04G24480 Oryza meridionalis OMERI04G24480 I 0.688
OMERI12G11270 Oryza meridionalis OMERI12G11270 I 0.692
ONIVA03G06110 Oryza nivara ONIVA03G06110 I 0.740
ONIVA04G27460 Oryza nivara ONIVA04G27460 I 0.688
OPUNC01G12900 Oryza punctata OPUNC01G12900 I 0.692
OPUNC03G05900 Oryza punctata OPUNC03G05900 I 0.741
ORGLA01G0108600 Oryza glaberrima ORGLA01G0108600 I 0.692
ORGLA03G0058900 Oryza glaberrima ORGLA03G0058900 I 0.740
ORUFI04G30650 Oryza rufipogon ORUFI04G30650 I 0.688
OS01G0313300 Oryza sativa OS01G0313300 I 0.692
OS03G0183300 Oryza sativa OS03G0183300 I 0.740
OS04G0669200 Oryza sativa OS04G0669200 I 0.688
POPTR_0002s04020 Populus trichocarpa POPTR_0002s04020 I 0.702
POPTR_0005s24460 Populus trichocarpa POPTR_0005s24460 I 0.700
POPTR_0008s16610 Populus trichocarpa POPTR_0008s16610 I 0.682
POPTR_0010s08300 Populus trichocarpa POPTR_0010s08300 I 0.708
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I 0.686
PRUPE_ppa023839mg Prunus persica PRUPE_ppa023839mg I 0.678
PRUPE_ppa024173mg Prunus persica PRUPE_ppa024173mg I 0.680
Sb01g045040 Sorghum bicolor Sb01g045040 I 0.747
Sb02g042760 Sorghum bicolor Sb02g042760 I 0.706
Sb03g012890 Sorghum bicolor Sb03g012890 I 0.692
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I 0.698
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I 0.698
SELMODRAFT_73164 Selaginella moellendorffii SELMODRAFT_73164 I 0.683
SELMODRAFT_73169 Selaginella moellendorffii SELMODRAFT_73169 I 0.683
Si002845m.g Setaria italica Si002845m.g I 0.692
Si023330m.g Setaria italica Si023330m.g I 0.685
Si031079m.g Setaria italica Si031079m.g I 0.706
Si033388m.g Setaria italica Si033388m.g I 0.682
Si036118m.g Setaria italica Si036118m.g I 0.787
TCM_004056 Theobroma cacao TCM_004056 I 0.677
TCM_026233 Theobroma cacao TCM_026233 I 0.689
Traes_2BL_0B09B840B Triticum aestivum Traes_2BL_0B09B840B I 0.681
TRAES3BF171600010CFD_g Triticum aestivum TRAES3BF171600010CFD_g I 0.692
Traes_4AS_8A64DBE8E Triticum aestivum Traes_4AS_8A64DBE8E I 0.715
Traes_4BL_7EC2BFC7B Triticum aestivum Traes_4BL_7EC2BFC7B I 0.757
Traes_5BL_98D063967 Triticum aestivum Traes_5BL_98D063967 I 0.692
Traes_5DL_41E3B1B23 Triticum aestivum Traes_5DL_41E3B1B23 I 0.692
TRIUR3_28710 Triticum urartu TRIUR3_28710 I 0.697
VIT_05s0049g00510 Vitis vinifera VIT_05s0049g00510 I 0.683
Ca_07754 Cicer arietinum Ca_07754 I 0.684
Ca_12081 Cicer arietinum Ca_12081 I 0.695
Ca_23170 Cicer arietinum Ca_23170 I 0.680
Cla006080 Citrullus lanatus Cla006080 I 0.682
Cla007697 Citrullus lanatus Cla007697 I 0.690
Pm009382 Prunus mume Pm009382 I 0.680
Pm020604 Prunus mume Pm020604 I 0.678
29584.m000234 Ricinus communis 29584.m000234 I 0.678
29895.m000321 Ricinus communis 29895.m000321 I 0.688
29900.m001561 Ricinus communis 29900.m001561 I 0.684
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I 0.686
cassava37347.valid.m1 Manihot esculenta cassava37347.valid.m1 I 0.678
cassava38166.valid.m1 Manihot esculenta cassava38166.valid.m1 I 0.678
cassava38509.m1 Manihot esculenta cassava38509.m1 I 0.680
cassava47179.m1 Manihot esculenta cassava47179.m1 I 0.696
cassava632.valid.m1 Manihot esculenta cassava632.valid.m1 I 0.680
Cucsa.053560 Cucumis sativus Cucsa.053560 I 0.682
Cucsa.062330 Cucumis sativus Cucsa.062330 I 0.702
e_gw1.60.113.1 Physcomitrella patens e_gw1.60.113.1 I 0.678
mgf018693m Mimulus guttatus mgf018693m I 0.685
mgf023600m Mimulus guttatus mgf023600m I 0.691
Aquca_017_00711 Aquilegia coerulea Aquca_017_00711 I 0.682
Ciclev10005820m.g Citrus clementina Ciclev10005820m.g I 0.680
Ciclev10021622m.g Citrus clementina Ciclev10021622m.g I 0.702
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I 0.686
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.689
evm.TU.supercontig_44.71 Carica papaya evm.TU.supercontig_44.71 I 0.680
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I 0.688
gene11442-v1.0-hybrid Fragaria vesca gene11442-v1.0-hybrid I 0.677
Gorai.001G253100 Gossypium raimondii Gorai.001G253100 I 0.680
Gorai.004G057000 Gossypium raimondii Gorai.004G057000 I 0.679
Gorai.005G049300 Gossypium raimondii Gorai.005G049300 I 0.693
Gorai.007G145800 Gossypium raimondii Gorai.007G145800 I 0.678
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I 0.689
Lus10011829.g Linum usitatissimum Lus10011829.g I 0.690
Lus10021193.g Linum usitatissimum Lus10021193.g I 0.690
MDP0000127134 Malus domestica MDP0000127134 I 0.680
MDP0000167207 Malus domestica MDP0000167207 I 0.680
MDP0000235313 Malus domestica MDP0000235313 I 0.680
MDP0000246808 Malus domestica MDP0000246808 I 0.695
MDP0000322279 Malus domestica MDP0000322279 I 0.691
MDP0000447570 Malus domestica MDP0000447570 I 0.695
orange1.1g039409m.g Citrus sinensis orange1.1g039409m.g I 0.680
orange1.1g042174m.g Citrus sinensis orange1.1g042174m.g I 0.702
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I 0.686
Pavir.Ba00136 Panicum virgatum Pavir.Ba00136 I 0.706
Pavir.Ba02374 Panicum virgatum Pavir.Ba02374 I 0.680
Pavir.Bb00962 Panicum virgatum Pavir.Bb00962 I 0.682
Pavir.Bb03609 Panicum virgatum Pavir.Bb03609 I 0.706
Pavir.Eb02324 Panicum virgatum Pavir.Eb02324 I 0.692
Pavir.Ga00187 Panicum virgatum Pavir.Ga00187 I 0.685
Pavir.Gb00092 Panicum virgatum Pavir.Gb00092 I 0.685
Pavir.Ia04158 Panicum virgatum Pavir.Ia04158 I 0.802
Pavir.J08480 Panicum virgatum Pavir.J08480 I 0.692
SapurV1A.0006s0850 Salix purpurea SapurV1A.0006s0850 I 0.702
SapurV1A.0007s0980 Salix purpurea SapurV1A.0007s0980 I 0.696
SapurV1A.0021s0980 Salix purpurea SapurV1A.0021s0980 I 0.682
SapurV1A.0233s0370 Salix purpurea SapurV1A.0233s0370 I 0.700
SapurV1A.2490s0030 Salix purpurea SapurV1A.2490s0030 I 0.696
chr5.CM0341.90.nc Lotus japonicus chr5.CM0341.90.nc I 0.697
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I 0.685
AC206951.3_FG016 Zea mays AC206951.3_FG016 N 0.718
BGIOSGA012597 Oryza indica BGIOSGA012597 N 0.700
BGIOSGA023726 Oryza indica BGIOSGA023726 N 0.700
LPERR03G05410 Leersia perrieri LPERR03G05410 N 0.691
LPERR03G14670 Leersia perrieri LPERR03G14670 N 0.700
OBART07G26160 Oryza barthii OBART07G26160 N 0.700
OGLUM03G06090 Oryza glumaepatula OGLUM03G06090 N 0.733
OGLUM03G17210 Oryza glumaepatula OGLUM03G17210 N 0.700
OGLUM07G26170 Oryza glumaepatula OGLUM07G26170 N 0.700
OMERI03G15020 Oryza meridionalis OMERI03G15020 N 0.700
OMERI07G22780 Oryza meridionalis OMERI07G22780 N 0.700
ONIVA03G06100 Oryza nivara ONIVA03G06100 N 0.733
ONIVA03G17860 Oryza nivara ONIVA03G17860 N 0.700
ONIVA07G25780 Oryza nivara ONIVA07G25780 N 0.700
OPUNC03G16250 Oryza punctata OPUNC03G16250 N 0.700
OPUNC07G24590 Oryza punctata OPUNC07G24590 N 0.700
ORGLA03G0058800 Oryza glaberrima ORGLA03G0058800 N 0.733
ORGLA03G0161100 Oryza glaberrima ORGLA03G0161100 N 0.700
ORGLA07G0205000 Oryza glaberrima ORGLA07G0205000 N 0.700
ORUFI03G05920 Oryza rufipogon ORUFI03G05920 N 0.733
ORUFI03G17430 Oryza rufipogon ORUFI03G17430 N 0.700
ORUFI07G27120 Oryza rufipogon ORUFI07G27120 N 0.700
OS03G0341000 Oryza sativa OS03G0341000 N 0.700
OS07G0674800 Oryza sativa OS07G0674800 N 0.700
Sb01g045050 Sorghum bicolor Sb01g045050 N 0.739
Pavir.Ib00527 Panicum virgatum Pavir.Ib00527 N 0.727
Pavir.J12680 Panicum virgatum Pavir.J12680 N 0.739