arid3a (Danio rerio)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSDARG00000070843 T014502_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.771 0.953
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.771 0.953
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.771 0.953
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.771 0.953
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.771 0.953
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.771 0.953
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.733 0.791
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.720 0.826
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.720 0.826
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.720 0.826
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.720 0.826
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.709 0.895
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.707 0.477
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.697 0.698
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.540 0.395
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000095133 ARID/BRIGHT 173 259
ENSDARP00000133985 ARID/BRIGHT 10 96

Links

Other ARID/BRIGHT family TFs
Other Danio rerio TFs

369 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.000
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.000
PK02661.1 Cannabis sativa PK02661.1 I 0.000
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.000
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.000
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.000
MDP0000290118 Malus domestica MDP0000290118 I 0.000
Lus10030763.g Linum usitatissimum Lus10030763.g I 0.000
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.000
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.000
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.000
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.000
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.000
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.000
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.000
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.000
Bo7g078820 Brassica oleracea Bo7g078820 I 0.000
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.000
cassava20325.m1 Manihot esculenta cassava20325.m1 I 0.000
29968.m000644 Ricinus communis 29968.m000644 I 0.000
Pm005894 Prunus mume Pm005894 I 0.000
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.000
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.000
TCM_011266 Theobroma cacao TCM_011266 I 0.000
Lus10003680.g Linum usitatissimum Lus10003680.g N 0.000
PGSC0003DMG400029466 Solanum tuberosum PGSC0003DMG400029466 N 0.000
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.000
Solyc04g008090.2 Solanum lycopersicum Solyc04g008090.2 N 0.000
Lus10028998.g Linum usitatissimum Lus10028998.g N 0.000
mgf026615m Mimulus guttatus mgf026615m N 0.000
VIT_01s0011g06060 Vitis vinifera VIT_01s0011g06060 N 0.000
Cla005897 Citrullus lanatus Cla005897 N 0.000
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.000
cassava40347.m1 Manihot esculenta cassava40347.m1 N 0.000
Cucsa.012070 Cucumis sativus Cucsa.012070 N 0.000