ENSLOCG00000006663 (Lepisosteus oculatus)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSLOCG00000006663 T014593_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.741 0.919
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.739 0.953
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.739 0.953
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.739 0.953
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.739 0.953
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.739 0.953
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.739 0.942
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.701 0.779
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.687 0.837
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.687 0.837
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.687 0.837
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.687 0.837
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.675 0.488
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.664 0.709
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.508 0.407
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000008045 ARID/BRIGHT 259 345

Links

Other ARID/BRIGHT family TFs
Other Lepisosteus oculatus TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PHUM046580 Pediculus humanus PHUM046580 D 0.000
ENSSTOG00000005252 Ictidomys tridecemlineatus ENSSTOG00000005252 I 0.000
PTSG_10225 Salpingoeca rosetta PTSG_10225 I 0.000
ENSOARG00000013205 Ovis aries ENSOARG00000013205 I 0.000
RFX8 Oryctolagus cuniculus ENSOCUG00000017895 I 0.000
RFX8 Otolemur garnettii ENSOGAG00000033445 I 0.000
ENSPPYG00000012106 Pongo abelii ENSPPYG00000012106 I 0.000
ENSPSIG00000017366 Pelodiscus sinensis ENSPSIG00000017366 I 0.000
RFX8 Pan troglodytes ENSPTRG00000012293 I 0.000
Rfx8 Rattus norvegicus ENSRNOG00000058243 I 0.000
RFX8 Sus scrofa ENSSSCG00000008165 I 0.000
Rfx8 Mus musculus ENSMUSG00000057173 I 0.000
ENSMMUP00000036226 Macaca fascicularis ENSMMUP00000036226 I 0.000
ENSP00000366022-D1 Bos grunniens ENSP00000366022-D1 I 0.000
Myotis_brandtii_RFX8_10001592 Myotis brandtii Myotis_brandtii_RFX8_10001592 I 0.000
Minc08233 Meloidogyne incognita Minc08233 I 0.000
XP_002167174.1 Hydra magnipapillata XP_002167174.1 I 0.000
maker-nMf.1.1.scaf03280-augustus-gene-0.7 Meloidogyne floridensis maker-nMf.1.1.scaf03280-augustus-gene-0.7 I 0.000
MhA1_Contig1476.frz3.gene5 Meloidogyne hapla MhA1_Contig1476.frz3.gene5 I 0.000
snap_masked-nMf.1.1.scaf12121-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf12121-processed-gene-0.2 I 0.000
RFX8 Macaca mulatta ENSMMUG00000030702 I 0.000
RFX8 Bos taurus ENSBTAG00000033998 I 0.000
RFX8 Canis familiaris ENSCAFG00000002190 I 0.000
rfx1/2/3 Ciona intestinalis ENSCING00000009186 I 0.000
ENSCSAG00000017155 Chlorocebus sabaeus ENSCSAG00000017155 I 0.000
ENSCSAVG00000006455 Ciona savignyi ENSCSAVG00000006455 I 0.000
rfx1b Danio rerio ENSDARG00000075904 I 0.000
RFX8 Dasypus novemcinctus ENSDNOG00000007529 I 0.000
RFX8 Felis catus ENSFCAG00000027253 I 0.000
RFX8 Homo sapiens ENSG00000196460 I 0.000
ENSGALG00000016780 Gallus gallus ENSGALG00000016780 I 0.000
RFX8 Gorilla gorilla ENSGGOG00000011918 I 0.000
ENSLACG00000022645 Latimeria chalumnae ENSLACG00000022645 I 0.000
RFX8 Loxodonta africana ENSLAFG00000011754 I 0.000
RFX8 Meleagris gallopavo ENSMGAG00000014805 I 0.000
RFX8 Myotis lucifugus ENSMLUG00000017785 I 0.000
RFX8 Monodelphis domestica ENSMODG00000025480 I 0.000
ENSECAG00000008397 Equus caballus ENSECAG00000008397 N 0.000
Afo_R015950 Aptenodytes forsteri Afo_R015950 N 0.000
Brh_R002527 Buceros rhinoceros Brh_R002527 N 0.000
ENSCPOG00000022483 Cavia porcellus ENSCPOG00000022483 N 0.000
ENSAMEG00000015567 Ailuropoda melanoleuca ENSAMEG00000015567 N 0.000