ENSSSCG00000022812 (Sus scrofa)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSSSCG00000022812 T014780_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.724 1.000
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.635 0.905
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.635 0.905
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.635 0.905
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.635 0.905
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.635 0.905
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.635 0.905
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.634 0.784
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.614 0.486
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.583 0.784
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.583 0.784
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.583 0.784
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.583 0.784
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.583 0.716
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.485 0.419
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.485 0.378
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000020579 ARID/BRIGHT 1 75

Links

Other ARID/BRIGHT family TFs
Other Sus scrofa TFs

363 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGI_10006980 Crassostrea gigas CGI_10006980 I 0.433
BGLB000541 Biomphalaria glabrata BGLB000541 I 0.455
Ocbimv22032810m.g Octopus bimaculoides Ocbimv22032810m.g I 0.433
LotgiG131492 Lottia gigantea LotgiG131492 I 0.433
arid1aa Tetraodon nigroviridis ENSTNIG00000009659 N 0.000
L898_g5090 Steinernema monticolum L898_g5090 N 0.000
arid1ab Takifugu rubripes ENSTRUG00000012325 N 0.000
ENSTSYG00000011521 Tarsius syrichta ENSTSYG00000011521 N 0.000
ENSXMAG00000009940 Xiphophorus maculatus ENSXMAG00000009940 N 0.000
ENSXMAG00000010716 Xiphophorus maculatus ENSXMAG00000010716 N 0.000
HMEL004935 Heliconius melpomene HMEL004935 N 0.000
KGM_16549 Danaus plexippus KGM_16549 N 0.000
MCINX004970 Melitaea cinxia MCINX004970 N 0.000
Gfo_R011571 Geospiza fortis Gfo_R011571 N 0.000
XP_002934686 Xenopus tropicalis XP_002934686 N 0.000
L596_g18182 Steinernema carpocapsae L596_g18182 N 0.000
L892_g25633 Steinernema scapterisci L892_g25633 N 0.000
BGIBMGA010596 Bombyx mori BGIBMGA010596 N 0.000
ENSPVAG00000010595 Pteropus vampyrus ENSPVAG00000010595 N 0.000
ENSPFOG00000015517 Poecilia formosa ENSPFOG00000015517 N 0.000
ENSPFOG00000007276 Poecilia formosa ENSPFOG00000007276 N 0.000
ENSPFOG00000002208 Poecilia formosa ENSPFOG00000002208 N 0.000
ENSONIG00000008068 Oreochromis niloticus ENSONIG00000008068 N 0.000
ENSONIG00000007618 Oreochromis niloticus ENSONIG00000007618 N 0.000
ENSOANG00000030531 Ornithorhynchus anatinus ENSOANG00000030531 N 0.000
ENSLOCG00000003798 Lepisosteus oculatus ENSLOCG00000003798 N 0.000
ENSGMOG00000012045 Gadus morhua ENSGMOG00000012045 N 0.000
ENSGMOG00000001024 Gadus morhua ENSGMOG00000001024 N 0.000
arid1ab Gasterosteus aculeatus ENSGACG00000007627 N 0.000
ENSGACG00000006735 Gasterosteus aculeatus ENSGACG00000006735 N 0.000
arid1ab Danio rerio ENSDARG00000101891 N 0.000
ENSCHOG00000011802 Choloepus hoffmanni ENSCHOG00000011802 N 0.000
ENSAMXG00000018241 Astyanax mexicanus ENSAMXG00000018241 N 0.000
ENSAMXG00000013606 Astyanax mexicanus ENSAMXG00000013606 N 0.000