Bra037544 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra037544 T018947_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.947 0.947
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.947 0.947
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra037544.1-P B3 5 100
Bra037544.1-P B3 245 339

Links

Other B3 family TFs
Other Brassica rapa TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP17701 Atta cephalotes ACEP17701 N
GRMZM2G060444 Zea mays GRMZM2G060444 N
OBART09G17250 Oryza barthii OBART09G17250 N
OGLUM09G17780 Oryza glumaepatula OGLUM09G17780 N
ONIVA09G18260 Oryza nivara ONIVA09G18260 N
ORUFI09G18560 Oryza rufipogon ORUFI09G18560 N