POPTR_0001s39240 (Populus trichocarpa)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 POPTR_0001s39240 T027346_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s39240.1 BED ZF 17 65

Links

Other BED ZF family TFs
Other Populus trichocarpa TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf026507m Mimulus guttatus mgf026507m I
POPTR_0001s01480 Populus trichocarpa POPTR_0001s01480 I
POPTR_0003s10000 Populus trichocarpa POPTR_0003s10000 I
PRUPE_ppa011917mg Prunus persica PRUPE_ppa011917mg I
Solyc08g005430.2 Solanum lycopersicum Solyc08g005430.2 I
Traes_6BL_7462E6F9B Triticum aestivum Traes_6BL_7462E6F9B I
TRIUR3_30418 Triticum urartu TRIUR3_30418 I
Pm023072 Prunus mume Pm023072 I
30190.m011066 Ricinus communis 30190.m011066 I
cassava30116.valid.m1 Manihot esculenta cassava30116.valid.m1 I
mgf002023m Mimulus guttatus mgf002023m I
mgf020920m Mimulus guttatus mgf020920m I
BGIOSGA022506 Oryza indica BGIOSGA022506 I
Bostr.28625s0309 Boechera stricta Bostr.28625s0309 I
Cagra.0736s0034 Capsella grandiflora Cagra.0736s0034 I
Carubv10013860m.g Capsella rubella Carubv10013860m.g I
Eucgr.D02603 Eucalyptus grandis Eucgr.D02603 I
evm.TU.supercontig_25.118 Carica papaya evm.TU.supercontig_25.118 I
gene13517-v1.0-hybrid Fragaria vesca gene13517-v1.0-hybrid I
Gorai.004G204600 Gossypium raimondii Gorai.004G204600 I
Pavir.Aa00919 Panicum virgatum Pavir.Aa00919 I
SapurV1A.0051s0520 Salix purpurea SapurV1A.0051s0520 I
SapurV1A.0177s0310 Salix purpurea SapurV1A.0177s0310 I
Thhalv10020873m.g Eutrema salsugineum Thhalv10020873m.g I
AtGRF5 Arabidopsis lyrata fgenesh2_kg.3__1504__AT3G13960.1 I
GRMZM2G067743 Zea mays GRMZM2G067743 I
GRMZM2G098594 Zea mays GRMZM2G098594 I
GRMZM2G119359 Zea mays GRMZM2G119359 I
GRMZM5G893117 Zea mays GRMZM5G893117 I
GSMUA_Achr10G06370_001 Musa acuminata GSMUA_Achr10G06370_001 I
GSMUA_Achr2G04650_001 Musa acuminata GSMUA_Achr2G04650_001 I
GSMUA_Achr8G30640_001 Musa acuminata GSMUA_Achr8G30640_001 I
LPERR06G06090 Leersia perrieri LPERR06G06090 I
MLOC_64055 Hordeum vulgare MLOC_64055 I
OB03G39940 Oryza brachyantha OB03G39940 I
OGLUM06G07010 Oryza glumaepatula OGLUM06G07010 I
OLONG_006788 Oryza longistaminata OLONG_006788 I
OMERI06G07610 Oryza meridionalis OMERI06G07610 I
F775_13620 Aegilops tauschii F775_13620 I
OPUNC06G06310 Oryza punctata OPUNC06G06310 I
GRF5 Arabidopsis thaliana AT3G13960 I
ORGLA06G0059900 Oryza glaberrima ORGLA06G0059900 I
ORUFI06G06870 Oryza rufipogon ORUFI06G06870 I
GRF2 Oryza sativa OS06G0204800 I
PGSC0003DMG400018491 Solanum tuberosum PGSC0003DMG400018491 I
LjSGA_066892.1 Lotus japonicus LjSGA_066892.1 N
F775_32835 Aegilops tauschii F775_32835 N
SapurV1A.0045s0430 Salix purpurea SapurV1A.0045s0430 N
BRADI1G12650 Brachypodium distachyon BRADI1G12650 N
TRIUR3_34986 Triticum urartu TRIUR3_34986 N
OPUNC04G06310 Oryza punctata OPUNC04G06310 N
Traes_4DS_261E93270 Triticum aestivum Traes_4DS_261E93270 N
Traes_4BS_AAE1439D4 Triticum aestivum Traes_4BS_AAE1439D4 N
Traes_4AL_A8CBB811B Triticum aestivum Traes_4AL_A8CBB811B N
Solyc02g092070.2 Solanum lycopersicum Solyc02g092070.2 N
PGSC0003DMG400021403 Solanum tuberosum PGSC0003DMG400021403 N