Cagra.0007s0024 (Capsella grandiflora)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Cagra.0007s0024 T028204_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0007s0024.1.p BED ZF 18 69
Cagra.0007s0024.2.p BED ZF 18 69

Links

Other BED ZF family TFs
Other Capsella grandiflora TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC050 Arabidopsis thaliana AT3G10480 D
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I
mgf000623m Mimulus guttatus mgf000623m I
cassava22912.valid.m1 Manihot esculenta cassava22912.valid.m1 I
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I
TRIUR3_33524 Triticum urartu TRIUR3_33524 I
Traes_7DS_9FBF54244 Triticum aestivum Traes_7DS_9FBF54244 I
Traes_7BL_FB5FAC1E8 Triticum aestivum Traes_7BL_FB5FAC1E8 I
Traes_6AL_8BA1FF8B2 Triticum aestivum Traes_6AL_8BA1FF8B2 I
TCM_043357 Theobroma cacao TCM_043357 I
Solyc05g055470.2 Solanum lycopersicum Solyc05g055470.2 I
Si016620m.g Setaria italica Si016620m.g I
Si013361m.g Setaria italica Si013361m.g I
Sb07g023900 Sorghum bicolor Sb07g023900 I
Sb04g037720 Sorghum bicolor Sb04g037720 I
POPTR_0010s23630 Populus trichocarpa POPTR_0010s23630 I
Lus10038670.g Linum usitatissimum Lus10038670.g I
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I
Pavir.Fb02407 Panicum virgatum Pavir.Fb02407 I
Pavir.Fa00048 Panicum virgatum Pavir.Fa00048 I
Pavir.Ab03009 Panicum virgatum Pavir.Ab03009 I
Pavir.Aa00085 Panicum virgatum Pavir.Aa00085 I
orange1.1g014130m.g Citrus sinensis orange1.1g014130m.g I
OS08G0562200 Oryza sativa OS08G0562200 I
Lus10037939.g Linum usitatissimum Lus10037939.g I
Gorai.012G007000 Gossypium raimondii Gorai.012G007000 I
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I
Ciclev10031606m.g Citrus clementina Ciclev10031606m.g I
Carubv10013694m.g Capsella rubella Carubv10013694m.g I
Carubv10013564m.g Capsella rubella Carubv10013564m.g I
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I
BRADI3G12470 Brachypodium distachyon BRADI3G12470 I
PGSC0003DMG402023373 Solanum tuberosum PGSC0003DMG402023373 I
LPERR08G20450 Leersia perrieri LPERR08G20450 I
GRMZM2G125777 Zea mays GRMZM2G125777 I
GRMZM2G113950 Zea mays GRMZM2G113950 I
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I
F775_27564 Aegilops tauschii F775_27564 I
BRADI3G56080 Brachypodium distachyon BRADI3G56080 I
OB02G44540 Oryza brachyantha OB02G44540 I
Bra034119 Brassica rapa Bra034119 I
Bra034118 Brassica rapa Bra034118 I
Bo1g143850 Brassica oleracea Bo1g143850 I
Bo1g143840 Brassica oleracea Bo1g143840 I
BGIOSGA026481 Oryza indica BGIOSGA026481 I
BGIOSGA009316 Oryza indica BGIOSGA009316 I
ANAC052 Arabidopsis thaliana AT3G10490 I
ONIVA02G40500 Oryza nivara ONIVA02G40500 I
OS02G0822400 Oryza sativa OS02G0822400 I
ORUFI08G26250 Oryza rufipogon ORUFI08G26250 I
ORUFI02G39260 Oryza rufipogon ORUFI02G39260 I
ORGLA08G0191600 Oryza glaberrima ORGLA08G0191600 I
ORGLA02G0329400 Oryza glaberrima ORGLA02G0329400 I
OPUNC08G21700 Oryza punctata OPUNC08G21700 I
OPUNC02G34910 Oryza punctata OPUNC02G34910 I
ONIVA08G26810 Oryza nivara ONIVA08G26810 I
OB08G30590 Oryza brachyantha OB08G30590 I
OMERI08G18580 Oryza meridionalis OMERI08G18580 I
OLONG_023179 Oryza longistaminata OLONG_023179 I
OGLUM08G25240 Oryza glumaepatula OGLUM08G25240 I
OGLUM02G38880 Oryza glumaepatula OGLUM02G38880 I
OBART08G23760 Oryza barthii OBART08G23760 I
OBART02G37700 Oryza barthii OBART02G37700 I
LPERR02G31180 Leersia perrieri LPERR02G31180 N