Bra028335 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra028335 T031508_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.914 0.980
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.914 0.902
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.914 0.882
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.914 0.882
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.902 0.882
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.902 0.882
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.875 0.863
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.862 0.843
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.862 0.843
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.855 0.765
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.852 0.804
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.852 0.784
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.852 0.784
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028335.1-P bHLH 162 212

Links

Other bHLH family TFs
Other Brassica rapa TFs

905 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU05411 Neurospora crassa NCU05411 D
MAM_06565 Metarhizium album MAM_06565 I
estExt_Genewise1Plus.C_110569 Neurospora discreta estExt_Genewise1Plus.C_110569 I
estExt_fgenesh1_pg.C_sca_8_chr1_1_00138 Nectria haematococca estExt_fgenesh1_pg.C_sca_8_chr1_1_00138 I
X797_008956 Metarhizium robertsii X797_008956 I
VHEMI01959 Torrubiella hemipterigena VHEMI01959 I
VDAG_07704 Verticillium dahliae VDAG_07704 I
THITE_2124588 Thielavia terrestris THITE_2124588 I
SMAC_04150 Sordaria macrospora SMAC_04150 I
PFICI_14901 Pestalotiopsis fici PFICI_14901 I
NEUTE1DRAFT_102079 Neurospora tetrasperma NEUTE1DRAFT_102079 I
NechaG98518 Fusarium solani NechaG98518 I
MGU_09148 Metarhizium guizhouense MGU_09148 I
MBR_06676 Metarhizium brunneum MBR_06676 I
MANI_019125 Metarhizium anisopliae MANI_019125 I
CFIO01_13633 Colletotrichum fioriniae CFIO01_13633 I
MAJ_07700 Metarhizium majus MAJ_07700 I
MAC_05787 Metarhizium acridum MAC_05787 I
GGTG_04497 Gaeumannomyces graminis GGTG_04497 I
FVEG_09736 Fusarium verticillioides FVEG_09736 I
FPSE_09752 Fusarium pseudograminearum FPSE_09752 I
FOXG_11065 Fusarium oxysporum FOXG_11065 I
FGRRES_01638 Fusarium graminearum FGRRES_01638 I
FFUJ_01862 Fusarium fujikuroi FFUJ_01862 I
F503_00471 Ophiostoma piceae uamh F503_00471 I
Cob_08365 Colletotrichum orbiculare Cob_08365 I
CMQ_6814 Grosmannia clavigera CMQ_6814 I
CH063_01030 Colletotrichum higginsianum CH063_01030 I
CGGC5_12854 Colletotrichum gloeosporioides CGGC5_12854 I
HMPREF1624_08666 Sporothrix schenckii HMPREF1624_08666 N
SPBR_04045 Sporothrix brasiliensis SPBR_04045 N
CTHT_0016110 Chaetomium thermophilum CTHT_0016110 N