BRADI2G11100 (Brachypodium distachyon)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 BRADI2G11100 T031633_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.901 0.980
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.901 0.959
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.901 0.959
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.901 0.959
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.901 0.959
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.901 0.959
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.877 0.857
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.872 0.633
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.872 0.592
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.868 0.857
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.868 0.857
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.868 0.857
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.868 0.837
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.855 0.816
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.855 0.816
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.840 0.673
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G11100.1 bHLH 349 397

Links

Other bHLH family TFs
Other Brachypodium distachyon TFs

573 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK05128.1 Cannabis sativa PK05128.1 D
OS02G0266800 Oryza sativa OS02G0266800 D
Cucsa.388800 Cucumis sativus Cucsa.388800 I
gene16561-v1.0-hybrid Fragaria vesca gene16561-v1.0-hybrid I
evm.TU.supercontig_52.101 Carica papaya evm.TU.supercontig_52.101 I
Ciclev10020133m.g Citrus clementina Ciclev10020133m.g I
Ciclev10001051m.g Citrus clementina Ciclev10001051m.g I
Aquca_017_00582 Aquilegia coerulea Aquca_017_00582 I
mgf012838m Mimulus guttatus mgf012838m I
mgf009803m Mimulus guttatus mgf009803m I
estExt_fgenesh1_pg.C_2060068 Physcomitrella patens estExt_fgenesh1_pg.C_2060068 I
Gorai.004G218300 Gossypium raimondii Gorai.004G218300 I
cassava22706.valid.m1 Manihot esculenta cassava22706.valid.m1 I
cassava18833.valid.m1 Manihot esculenta cassava18833.valid.m1 I
cassava18832.valid.m1 Manihot esculenta cassava18832.valid.m1 I
29883.m001986 Ricinus communis 29883.m001986 I
29598.m000468 Ricinus communis 29598.m000468 I
Pm020231 Prunus mume Pm020231 I
AMTR_s00002p00268140 Amborella trichopoda AMTR_s00002p00268140 I
orange1.1g012287m.g Citrus sinensis orange1.1g012287m.g I
PDK_20s1417191g003 Phoenix dactylifera PDK_20s1417191g003 I
PK11472.1 Cannabis sativa PK11472.1 I
SapurV1A.0729s0180 Salix purpurea SapurV1A.0729s0180 I
SapurV1A.0110s0140 Salix purpurea SapurV1A.0110s0140 I
SapurV1A.0006s1330 Salix purpurea SapurV1A.0006s1330 I
Pavir.Ab00505 Panicum virgatum Pavir.Ab00505 I
Pavir.Aa03364 Panicum virgatum Pavir.Aa03364 I
orange1.1g013166m.g Citrus sinensis orange1.1g013166m.g I
Gorai.004G075400 Gossypium raimondii Gorai.004G075400 I
MDP0000270365 Malus domestica MDP0000270365 I
MDP0000176747 Malus domestica MDP0000176747 I
Lus10015913.g Linum usitatissimum Lus10015913.g I
Lus10006590.g Linum usitatissimum Lus10006590.g I
Gorai.007G277300 Gossypium raimondii Gorai.007G277300 I
Gorai.007G141500 Gossypium raimondii Gorai.007G141500 I
Gorai.004G246700 Gossypium raimondii Gorai.004G246700 I
Cla015037 Citrullus lanatus Cla015037 I
LPERR06G19690 Leersia perrieri LPERR06G19690 I
Ca_03753 Cicer arietinum Ca_03753 I
OMERI02G12230 Oryza meridionalis OMERI02G12230 I
OMERI02G06470 Oryza meridionalis OMERI02G06470 I
OGLUM02G11500 Oryza glumaepatula OGLUM02G11500 I
OGLUM02G05620 Oryza glumaepatula OGLUM02G05620 I
OBART02G11580 Oryza barthii OBART02G11580 I
OBART02G05680 Oryza barthii OBART02G05680 I
OB06G31430 Oryza brachyantha OB06G31430 I
ONIVA02G06040 Oryza nivara ONIVA02G06040 I
LPERR02G04950 Leersia perrieri LPERR02G04950 I
GSMUA_Achr4G28530_001 Musa acuminata GSMUA_Achr4G28530_001 I
GSMUA_Achr10G08670_001 Musa acuminata GSMUA_Achr10G08670_001 I
GRMZM2G098904 Zea mays GRMZM2G098904 I
GLYMA19G43420 Glycine max GLYMA19G43420 I
GLYMA03G40730 Glycine max GLYMA03G40730 I
BGIOSGA007649 Oryza indica BGIOSGA007649 I
BGIOSGA006734 Oryza indica BGIOSGA006734 I
PRUPE_ppa005367mg Prunus persica PRUPE_ppa005367mg I
BZO2H3 Vitis vinifera VIT_14s0030g02200 I
TCM_026349 Theobroma cacao TCM_026349 I
TCM_004222 Theobroma cacao TCM_004222 I
Solyc01g097330.2 Solanum lycopersicum Solyc01g097330.2 I
Si017778m.g Setaria italica Si017778m.g I
Sb04g005020 Sorghum bicolor Sb04g005020 I
ONIVA02G12920 Oryza nivara ONIVA02G12920 I
POPTR_0013s03800 Populus trichocarpa POPTR_0013s03800 I
POPTR_0002s04660 Populus trichocarpa POPTR_0002s04660 I
PGSC0003DMG400019455 Solanum tuberosum PGSC0003DMG400019455 I
OS02G0175100 Oryza sativa OS02G0175100 I
ORUFI02G11610 Oryza rufipogon ORUFI02G11610 I
ORUFI02G05790 Oryza rufipogon ORUFI02G05790 I
ORGLA02G0104200 Oryza glaberrima ORGLA02G0104200 I
ORGLA02G0052000 Oryza glaberrima ORGLA02G0052000 I
OPUNC02G10230 Oryza punctata OPUNC02G10230 I
cassava36728.valid.m1 Manihot esculenta cassava36728.valid.m1 N
SapurV1A.0860s0020 Salix purpurea SapurV1A.0860s0020 N
SapurV1A.2969s0020 Salix purpurea SapurV1A.2969s0020 N