BHLHE40 (Loxodonta africana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSLAFG00000004896 T034903_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.914 1.000
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.914 1.000
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.914 1.000
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.914 1.000
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.914 1.000
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.914 1.000
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.914 1.000
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.914 1.000
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.914 1.000
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.914 1.000
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.914 1.000
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.914 1.000
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.914 1.000
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.914 1.000
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.914 1.000
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.914 0.981
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.914 0.981
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.914 0.981
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.914 0.981
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.914 0.981
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.914 0.981
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000004098 bHLH 54 108

Links

Other bHLH family TFs
Other Loxodonta africana TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK05128.1 Cannabis sativa PK05128.1 D
OS02G0266800 Oryza sativa OS02G0266800 D
estExt_fgenesh1_pg.C_2060068 Physcomitrella patens estExt_fgenesh1_pg.C_2060068 I
evm.TU.supercontig_52.101 Carica papaya evm.TU.supercontig_52.101 I
Eucgr.C03986 Eucalyptus grandis Eucgr.C03986 I
Ciclev10020133m.g Citrus clementina Ciclev10020133m.g I
Ciclev10008515m.g Citrus clementina Ciclev10008515m.g I
Ciclev10001051m.g Citrus clementina Ciclev10001051m.g I
Aquca_017_00582 Aquilegia coerulea Aquca_017_00582 I
mgf012838m Mimulus guttatus mgf012838m I
mgf009803m Mimulus guttatus mgf009803m I
gw1.220.22.1 Physcomitrella patens gw1.220.22.1 I
Gorai.004G075400 Gossypium raimondii Gorai.004G075400 I
Cucsa.388800 Cucumis sativus Cucsa.388800 I
Cucsa.289120 Cucumis sativus Cucsa.289120 I
Cucsa.133290 Cucumis sativus Cucsa.133290 I
cassava22706.valid.m1 Manihot esculenta cassava22706.valid.m1 I
cassava18833.valid.m1 Manihot esculenta cassava18833.valid.m1 I
cassava18832.valid.m1 Manihot esculenta cassava18832.valid.m1 I
29883.m001986 Ricinus communis 29883.m001986 I
29598.m000468 Ricinus communis 29598.m000468 I
Pm020231 Prunus mume Pm020231 I
orange1.1g012287m.g Citrus sinensis orange1.1g012287m.g I
PDK_20s1417191g003 Phoenix dactylifera PDK_20s1417191g003 I
PK11472.1 Cannabis sativa PK11472.1 I
Thhalv10004611m.g Eutrema salsugineum Thhalv10004611m.g I
SapurV1A.0729s0180 Salix purpurea SapurV1A.0729s0180 I
SapurV1A.0110s0140 Salix purpurea SapurV1A.0110s0140 I
SapurV1A.0006s1330 Salix purpurea SapurV1A.0006s1330 I
Pavir.Ab00505 Panicum virgatum Pavir.Ab00505 I
Pavir.Aa03364 Panicum virgatum Pavir.Aa03364 I
orange1.1g015739m.g Citrus sinensis orange1.1g015739m.g I
orange1.1g013166m.g Citrus sinensis orange1.1g013166m.g I
gene16561-v1.0-hybrid Fragaria vesca gene16561-v1.0-hybrid I
MDP0000270365 Malus domestica MDP0000270365 I
MDP0000176747 Malus domestica MDP0000176747 I
Lus10015913.g Linum usitatissimum Lus10015913.g I
Lus10006590.g Linum usitatissimum Lus10006590.g I
Gorai.007G277300 Gossypium raimondii Gorai.007G277300 I
Gorai.007G141500 Gossypium raimondii Gorai.007G141500 I
Gorai.004G246700 Gossypium raimondii Gorai.004G246700 I
Gorai.004G218300 Gossypium raimondii Gorai.004G218300 I
Cla020112 Citrullus lanatus Cla020112 I
GSMUA_Achr7G07650_001 Musa acuminata GSMUA_Achr7G07650_001 I
OPUNC02G10230 Oryza punctata OPUNC02G10230 I
ONIVA02G12920 Oryza nivara ONIVA02G12920 I
ONIVA02G06040 Oryza nivara ONIVA02G06040 I
OMERI02G12230 Oryza meridionalis OMERI02G12230 I
OMERI02G06470 Oryza meridionalis OMERI02G06470 I
OGLUM02G11500 Oryza glumaepatula OGLUM02G11500 I
OGLUM02G05620 Oryza glumaepatula OGLUM02G05620 I
OBART02G11580 Oryza barthii OBART02G11580 I
OBART02G05680 Oryza barthii OBART02G05680 I
LPERR02G04950 Leersia perrieri LPERR02G04950 I
ORGLA02G0052000 Oryza glaberrima ORGLA02G0052000 I
GSMUA_Achr4G28530_001 Musa acuminata GSMUA_Achr4G28530_001 I
GSMUA_Achr10G08670_001 Musa acuminata GSMUA_Achr10G08670_001 I
GRMZM2G098904 Zea mays GRMZM2G098904 I
GLYMA20G36750 Glycine max GLYMA20G36750 I
GLYMA19G43420 Glycine max GLYMA19G43420 I
GLYMA10G30410 Glycine max GLYMA10G30410 I
GLYMA03G40730 Glycine max GLYMA03G40730 I
Bra020620 Brassica rapa Bra020620 I
BGIOSGA007649 Oryza indica BGIOSGA007649 I
BGIOSGA006734 Oryza indica BGIOSGA006734 I
SELMODRAFT_270282 Selaginella moellendorffii SELMODRAFT_270282 I
Cla015037 Citrullus lanatus Cla015037 I
Cla011478 Citrullus lanatus Cla011478 I
Ca_03753 Cicer arietinum Ca_03753 I
BZO2H3 Vitis vinifera VIT_14s0030g02200 I
TCM_026349 Theobroma cacao TCM_026349 I
TCM_004222 Theobroma cacao TCM_004222 I
Solyc01g097330.2 Solanum lycopersicum Solyc01g097330.2 I
Si017778m.g Setaria italica Si017778m.g I
SELMODRAFT_439017 Selaginella moellendorffii SELMODRAFT_439017 I
AMTR_s00002p00268140 Amborella trichopoda AMTR_s00002p00268140 I
Sb04g005020 Sorghum bicolor Sb04g005020 I
PRUPE_ppa005367mg Prunus persica PRUPE_ppa005367mg I
POPTR_0013s03800 Populus trichocarpa POPTR_0013s03800 I
POPTR_0002s04660 Populus trichocarpa POPTR_0002s04660 I
PGSC0003DMG400019455 Solanum tuberosum PGSC0003DMG400019455 I
OS02G0175100 Oryza sativa OS02G0175100 I
ORUFI02G11610 Oryza rufipogon ORUFI02G11610 I
ORUFI02G05790 Oryza rufipogon ORUFI02G05790 I
ORGLA02G0104200 Oryza glaberrima ORGLA02G0104200 I
cassava36728.valid.m1 Manihot esculenta cassava36728.valid.m1 N