ascl1b (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000011380 T037746_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASCL1
M04135_2.00 		Homo sapiens
NRCASSTGYN
NRCASSTGYN		 SELEX
Yin et al.(2017)
ASCL1_eDBD_HT-SELEX 		0.859 0.920
ASCL1
M08055_2.00 		Homo sapiens
NNRGCAGCTGSNN
NNSCAGCTGCYNN		 ChIP-seq
Mathelier et al.(2014)
MA1100.1 		0.859 0.920
ASCL1
M08730_2.00 		Homo sapiens
NNVCASCTGCYBYN
NRVRGCAGSTGBNN		 Misc
Kulakovskiy et al.(2013)
ASCL1_HUMAN.H11MO.0.A 		0.859 0.920
Ascl1
M08748_2.00 		Mus musculus
BHSCASCTGCYBBN
NVVRGCAGSTGSDV		 Misc
Kulakovskiy et al.(2013)
ASCL1_MOUSE.H11MO.0.A 		0.859 0.920
Ascl1
M09464_2.00 		Mus musculus
NVCABCTGBBNN
NNVVCAGVTGBN		 Misc
Heinz et al.(2010)
NeuralTubes-Ascl1_GSE55840 		0.859 0.920
ASCL1
M09855_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6_01 		0.859 0.920
ASCL1
M09856_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6_02 		0.859 0.920
ASCL1
M09857_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6 		0.859 0.920
ASCL1
M04136_2.00 		Homo sapiens
NRCAGCTGYN
NRCAGCTGYN		 SELEX
Yin et al.(2017)
ASCL1_eDBD_Methyl-HT-SELEX 		0.859 0.920
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000014325 bHLH 54 104

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ascl1 Mus musculus ENSMUSG00000020052 D 0.859
ASCL1 Homo sapiens ENSG00000139352 D 0.859
ASCL1 Vicugna pacos ENSVPAG00000002018 I 0.859
ENSONIG00000021219 Oreochromis niloticus ENSONIG00000021219 I 0.859
ascl1b Oryzias latipes ENSORLG00000012117 I 0.914
ascl1a Oryzias latipes ENSORLG00000016504 I 0.859
ENSPFOG00000018073 Poecilia formosa ENSPFOG00000018073 I 0.859
ENSPFOG00000020633 Poecilia formosa ENSPFOG00000020633 I 0.914
ENSPPYG00000004884 Pongo abelii ENSPPYG00000004884 I 0.859
ASCL1 Pteropus vampyrus ENSPVAG00000011272 I 0.859
Ascl1 Rattus norvegicus ENSRNOG00000004294 I 0.859
ENSSHAG00000011936 Sarcophilus harrisii ENSSHAG00000011936 I 0.859
ENSSTOG00000028420 Ictidomys tridecemlineatus ENSSTOG00000028420 I 0.859
ascl1b Takifugu rubripes ENSTRUG00000011651 I 0.914
ascl1a Takifugu rubripes ENSTRUG00000012801 I 0.859
ASCL1 Tursiops truncatus ENSTTRG00000016243 I 0.859
ASCL1 Otolemur garnettii ENSOGAG00000030324 I 0.859
ENSXMAG00000019614 Xiphophorus maculatus ENSXMAG00000019614 I 0.859
ENSXMAG00000019890 Xiphophorus maculatus ENSXMAG00000019890 I 0.914
ENSBTAP00000021592-D1 Bos grunniens ENSBTAP00000021592-D1 I 0.859
ENSP00000266744 Macaca fascicularis ENSP00000266744 I 0.859
Myotis_brandtii_ASCL1_10010089 Myotis brandtii Myotis_brandtii_ASCL1_10010089 I 0.459
Ogr07565 Ophisaurus gracilis Ogr07565 I 0.859
Ogr16040 Ophisaurus gracilis Ogr16040 I 0.459
Pvit_15764 Pogona vitticeps Pvit_15764 I 0.859
Sakowv30008499m.g Saccoglossus kowalevskii Sakowv30008499m.g I 0.849
ascl1 Xenopus tropicalis XB-GENE-1032967 I 0.859
ascl1.L Xenopus laevis XB-GENE-1032969 I 0.859
ascl1.S Xenopus laevis XB-GENE-17340658 I 0.859
ASCL1 Gorilla gorilla ENSGGOG00000005479 I 0.859
ENSAMXG00000024858 Astyanax mexicanus ENSAMXG00000024858 I 0.914
ENSAMXG00000025568 Astyanax mexicanus ENSAMXG00000025568 I 0.864
ASCL1 Bos taurus ENSBTAG00000016227 I 0.859
ASCL1 Canis familiaris ENSCAFG00000007324 I 0.859
ASCL1 Callithrix jacchus ENSCJAG00000014345 I 0.859
ASCL1 Cavia porcellus ENSCPOG00000020666 I 0.859
ENSCSAG00000018938 Chlorocebus sabaeus ENSCSAG00000018938 I 0.859
ascl1a Danio rerio ENSDARG00000038386 I 0.859
ascl1b Danio rerio ENSDARG00000101628 I 0.914
ASCL1 Dasypus novemcinctus ENSDNOG00000001616 I 0.859
ASCL1 Felis catus ENSFCAG00000008250 I 0.859
ascl1b Gasterosteus aculeatus ENSGACG00000011375 I 0.914
ascl1a Gasterosteus aculeatus ENSGACG00000020048 I 0.859
ENSONIG00000020440 Oreochromis niloticus ENSONIG00000020440 I 0.914
ENSGMOG00000002268 Gadus morhua ENSGMOG00000002268 I 0.859
ENSGMOG00000009589 Gadus morhua ENSGMOG00000009589 I 0.914
ENSLACG00000010712 Latimeria chalumnae ENSLACG00000010712 I 0.879
ENSLOCG00000017318 Lepisosteus oculatus ENSLOCG00000017318 I 0.914
ENSMEUG00000010370 Macropus eugenii ENSMEUG00000010370 I 0.859
ASCL1 Macaca mulatta ENSMMUG00000005747 I 0.859
ASCL1 Monodelphis domestica ENSMODG00000002347 I 0.859
ENSNLEG00000006410 Nomascus leucogenys ENSNLEG00000006410 I 0.859
ASCL1 Ornithorhynchus anatinus ENSOANG00000013973 I 0.859
ENSOARG00000015879 Ovis aries ENSOARG00000015879 I 0.859
ASCL1 Oryctolagus cuniculus ENSOCUG00000006992 I 0.859
ENSAMEG00000006449 Ailuropoda melanoleuca ENSAMEG00000006449 I 0.859