POPTR_0005s12370 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0005s12370 T043806_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.902 0.882
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.902 0.863
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.902 0.863
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.864 0.863
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.864 0.863
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.864 0.824
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.864 0.824
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.852 0.843
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.852 0.843
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.852 0.843
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.851 0.784
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.839 0.824
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.839 0.824
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s12370.1 bHLH 208 258

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

757 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MBD3 Ochotona princeps ENSOPRG00000008719 I
mbd3.S Xenopus laevis XB-GENE-491557 I
Pvit_04402 Pogona vitticeps Pvit_04402 I
Ogr03458 Ophisaurus gracilis Ogr03458 I
ENSP00000256429 Macaca fascicularis ENSP00000256429 I
ENSP00000256429-D1 Bos grunniens ENSP00000256429-D1 I
ENSXMAG00000012716 Xiphophorus maculatus ENSXMAG00000012716 I
MBD3 Pteropus vampyrus ENSPVAG00000017085 I
ENSPPYG00000009325 Pongo abelii ENSPPYG00000009325 I
ENSAMEG00000003491 Ailuropoda melanoleuca ENSAMEG00000003491 I
ENSOARG00000012359 Ovis aries ENSOARG00000012359 I
ENSOARG00000004770 Ovis aries ENSOARG00000004770 I
MBD2 Microcebus murinus ENSMICG00000008970 I
ENSAMXG00000017952 Astyanax mexicanus ENSAMXG00000017952 I
MBD3 Equus caballus ENSECAG00000015485 I
ENSLACG00000016038 Latimeria chalumnae ENSLACG00000016038 I
ENSECAG00000022368 Equus caballus ENSECAG00000022368 I
MBD3 Felis catus ENSFCAG00000000763 I
mbd3a Danio rerio ENSDARG00000061774 I
ENSFCAG00000022047 Felis catus ENSFCAG00000022047 I
mbd3b Danio rerio ENSDARG00000042029 I
MBD3 Gasterosteus aculeatus ENSGACG00000012755 I
ENSAPLG00000010058 Anas platyrhynchos ENSAPLG00000010058 I
ENSGMOG00000008953 Gadus morhua ENSGMOG00000008953 I
Gfo_R007597 Geospiza fortis Gfo_R007597 N
Myotis_brandtii_MBD3_10015627 Myotis brandtii Myotis_brandtii_MBD3_10015627 N
ENSAPLG00000003384 Anas platyrhynchos ENSAPLG00000003384 N
ENSP00000156825 Macaca fascicularis ENSP00000156825 N
ENSBTAP00000003926-D1 Bos grunniens ENSBTAP00000003926-D1 N
Tal_R008196 Tyto alba Tal_R008196 N
Brh_R003386 Buceros rhinoceros Brh_R003386 N
MBD3 Sus scrofa ENSSSCG00000013435 N
Alligator_sinensis_CCG000430.1 Alligator sinensis Alligator_sinensis_CCG000430.1 N
Afo_R010057 Aptenodytes forsteri Afo_R010057 N
Aan_R011698 Calypte anna Aan_R011698 N
MBD3 Tetraodon nigroviridis ENSTNIG00000010627 N
ENSSHAG00000013346 Sarcophilus harrisii ENSSHAG00000013346 N
Mbd3 Rattus norvegicus ENSRNOG00000028956 N
ENSPANG00000015324 Papio anubis ENSPANG00000015324 N
MBD3 Homo sapiens ENSG00000071655 N
MBD3 Ornithorhynchus anatinus ENSOANG00000003672 N
Mbd3 Mus musculus ENSMUSG00000035478 N
ENSMPUG00000008045 Mustela putorius furo ENSMPUG00000008045 N
MBD3 Monodelphis domestica ENSMODG00000004125 N
MBD3 Meleagris gallopavo ENSMGAG00000002493 N
ENSLOCG00000006043 Lepisosteus oculatus ENSLOCG00000006043 N