ENSBTAP00000040772-D1 (Bos grunniens)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 ENSBTAP00000040772-D1 T047156_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.914 1.000
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.914 1.000
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.914 1.000
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.914 1.000
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.914 1.000
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.914 1.000
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.914 1.000
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.914 0.981
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.914 0.981
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.914 0.981
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.914 0.981
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.914 0.981
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.914 0.981
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.914 0.981
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.914 0.981
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.914 0.981
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.914 0.981
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.914 0.981
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.914 0.981
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.914 0.981
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.914 0.981
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000040772-D1 bHLH 46 100

Links

Other bHLH family TFs
Other Bos grunniens TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RKD2 Arabidopsis thaliana AT1G74480 D
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I
Ca_27191 Cicer arietinum Ca_27191 I
Cla019404 Citrullus lanatus Cla019404 I
Pm024905 Prunus mume Pm024905 I
30138.m004071 Ricinus communis 30138.m004071 I
cassava35166.m1 Manihot esculenta cassava35166.m1 I
Cucsa.197700 Cucumis sativus Cucsa.197700 I
mg020279m Mimulus guttatus mg020279m I
mgf022310m Mimulus guttatus mgf022310m I
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I
Carubv10011133m.g Capsella rubella Carubv10011133m.g I
Carubv10021541m.g Capsella rubella Carubv10021541m.g I
RKD1 Arabidopsis thaliana AT1G18790 I
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I
Genemark1.7281_g Coccomyxa subellipsoidea C169 Genemark1.7281_g I
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I
Lus10019100.g Linum usitatissimum Lus10019100.g I
Lus10034456.g Linum usitatissimum Lus10034456.g I
MDP0000261199 Malus domestica MDP0000261199 I
MDP0000266172 Malus domestica MDP0000266172 I
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I
Bo7g064180 Brassica oleracea Bo7g064180 I
Bo8g068090 Brassica oleracea Bo8g068090 I
Bra008153 Brassica rapa Bra008153 I
Bra012122 Brassica rapa Bra012122 I
Bra015907 Brassica rapa Bra015907 I
Bra016542 Brassica rapa Bra016542 I
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I
GLYMA04G33516 Glycine max GLYMA04G33516 I
GLYMA05G01030 Glycine max GLYMA05G01030 I
GLYMA06G20881 Glycine max GLYMA06G20881 I
GLYMA17G10866 Glycine max GLYMA17G10866 I
Ca_13151 Cicer arietinum Ca_13151 I
MLOC_12609 Hordeum vulgare MLOC_12609 I
TRIUR3_19503 Triticum urartu TRIUR3_19503 I
MLOC_59560 Hordeum vulgare MLOC_59560 I
MTR_3g435550 Medicago truncatula MTR_3g435550 I
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I
TCM_014009 Theobroma cacao TCM_014009 I
PDK_20s1788591g001 Phoenix dactylifera PDK_20s1788591g001 N
RKD3 Arabidopsis thaliana AT5G66990 N
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N
Pavir.Eb01347 Panicum virgatum Pavir.Eb01347 N
Pavir.Ea01492 Panicum virgatum Pavir.Ea01492 N
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N
Cagra.2007s0003 Capsella grandiflora Cagra.2007s0003 N
Carubv10027579m.g Capsella rubella Carubv10027579m.g N