Carubv10013649m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10013649m.g T049388_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.914 0.980
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.901 0.902
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.901 0.902
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.888 0.941
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.888 0.941
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.875 0.922
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.875 0.902
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.875 0.902
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.875 0.902
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.868 0.804
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.864 0.843
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.864 0.824
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.864 0.824
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10013649m bHLH 271 321

Links

Other bHLH family TFs
Other Capsella rubella TFs

884 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_00689 Aspergillus nidulans CADANIAG00001981 D
FGRRES_09921 Fusarium graminearum FGRRES_09921 D
SIP4 Saccharomyces cerevisiae YJL089W D
CAT8 Saccharomyces cerevisiae YMR280C D
acu-15 Neurospora crassa NCU06656 D
CIMG_09602 Coccidioides immitis CIMG_09602 I
CPAG_00982 Candida parapsilosis CPAG_00982 I
CPAG_01919 Candida parapsilosis CPAG_01919 I
MCYG_02995 Microsporum canis MCYG_02995 I
PGUG_01292 Candida guilliermondii PGUG_01292 I
VDBG_00686 Verticillium albo atrum VDBG_00686 I
A1O1_06777 Capronia coronata A1O1_06777 I
A1O5_07453 Cladophialophora psammophila A1O5_07453 I
A1O7_09708 Cladophialophora yegresii A1O7_09708 I
AACERI_AaceriABL121C Saccharomycetaceae sp ashbya aceri AACERI_AaceriABL121C I
AACERI_AaceriAFR096W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFR096W I
ACRE_084730 Acremonium chrysogenum ACRE_084730 I
AGOS_ABL121C Ashbya gossypii AGOS_ABL121C I
AGOS_AFR096W Ashbya gossypii AGOS_AFR096W I
AOL_s00173g90 Arthrobotrys oligospora AOL_s00173g90 I
ARB_01763 Arthroderma benhamiae ARB_01763 I
AUEXF2481DRAFT_25000 Aureobasidium subglaciale AUEXF2481DRAFT_25000 I
BAUCODRAFT_120474 Baudoinia compniacensis BAUCODRAFT_120474 I
Bcin14g04080 Botrytis cinerea Bcin14g04080 I
BDDG_03989 Blastomyces dermatitidis BDDG_03989 I
BN7_1590 Wickerhamomyces ciferrii BN7_1590 I
BN7_5956 Wickerhamomyces ciferrii BN7_5956 I
ACLA_021920 Aspergillus clavatus CADACLAG00001871 I
CADAFLAG00003675 Aspergillus flavus CADAFLAG00003675 I
AFUA_1G13510 Aspergillus fumigatus CADAFUAG00007202 I
CADANGAG00006980 Aspergillus niger CADANGAG00006980 I
CADAORAG00006095 Aspergillus oryzae CADAORAG00006095 I
ATEG_00558 Aspergillus terreus CADATEAG00006881 I
NFIA_011990 Neosartorya fischeri CADNFIAG00001575 I
CAGL0L03377g Candida glabrata CAGL0L03377g I
CAGL0M03025g Candida glabrata CAGL0M03025g I
CANTEDRAFT_117377 Candida tenuis CANTEDRAFT_117377 I
CCM_00520 Cordyceps militaris CCM_00520 I
CFIO01_04476 Colletotrichum fioriniae CFIO01_04476 I
CGGC5_6484 Colletotrichum gloeosporioides CGGC5_6484 I
CHGG_00728 Chaetomium globosum CHGG_00728 I
CLUG_01305 Clavispora lusitaniae CLUG_01305 I
CMQ_3248 Grosmannia clavigera CMQ_3248 I
Cob_09661 Colletotrichum orbiculare Cob_09661 I
CORT_0A06750 Candida orthopsilosis CORT_0A06750 I
CORT_0B04760 Candida orthopsilosis CORT_0B04760 I
CPC735_024080 Coccidioides posadasii CPC735_024080 I
CPUR_03154 Claviceps purpurea CPUR_03154 I
CSUB01_03093 Colletotrichum sublineola CSUB01_03093 I
CTHT_0052680 Chaetomium thermophilum CTHT_0052680 I
DEHA2F04202g Debaryomyces hansenii DEHA2F04202g I
DEHA2G02090g Debaryomyces hansenii DEHA2G02090g I
DOTSEDRAFT_67755 Dothistroma septosporum DOTSEDRAFT_67755 I
DRE_06992 Drechslerella stenobrocha DRE_06992 I
Ecym_4616 Eremothecium cymbalariae Ecym_4616 I
Ecym_6340 Eremothecium cymbalariae Ecym_6340 I
EURHEDRAFT_525504 Aspergillus ruber EURHEDRAFT_525504 I
F503_06102 Ophiostoma piceae uamh F503_06102 I
FFUJ_07541 Fusarium fujikuroi FFUJ_07541 I
FOXG_05502 Fusarium oxysporum FOXG_05502 I
FPSE_03099 Fusarium pseudograminearum FPSE_03099 I
FVEG_02639 Fusarium verticillioides FVEG_02639 I
G647_08575 Cladophialophora carrionii G647_08575 I
GGTG_09932 Gaeumannomyces graminis GGTG_09932 I
GLRG_10212 Colletotrichum graminicola GLRG_10212 I
GMDG_03942 Pseudogymnoascus destructans GMDG_03942 I
GMDG_06993 Pseudogymnoascus destructans GMDG_06993 I
GNLVRS01_PISO0I17586g Millerozyma farinosa GNLVRS01_PISO0I17586g I
GNLVRS01_PISO0J19347g Millerozyma farinosa GNLVRS01_PISO0J19347g I
GNLVRS01_PISO0K20118g Millerozyma farinosa GNLVRS01_PISO0K20118g I
GNLVRS01_PISO0L20119g Millerozyma farinosa GNLVRS01_PISO0L20119g I
GSTUM_00005465001 Tuber melanosporum GSTUM_00005465001 I
H101_04897 Trichophyton interdigitale H101_04897 I
H102_08795 Trichophyton rubrum H102_08795 I
H105_08820 Trichophyton soudanense H105_08820 I
HCBG_02970 Histoplasma capsulatum HCBG_02970 I
HCBG_04348 Histoplasma capsulatum HCBG_04348 I
HMPREF1120_01646 Exophiala dermatitidis HMPREF1120_01646 I
HMPREF1541_02579 Cyphellophora europaea HMPREF1541_02579 I
HMPREF1624_05843 Sporothrix schenckii HMPREF1624_05843 I
KAFR_0A01480 Kazachstania africana KAFR_0A01480 I
KAFR_0B03950 Kazachstania africana KAFR_0B03950 I
KLLA0_D01452g Kluyveromyces lactis KLLA0_D01452g I
KLLA0_F14322g Kluyveromyces lactis KLLA0_F14322g I
KLTH0C03762g Lachancea thermotolerans KLTH0C03762g I
KLTH0D03564g Lachancea thermotolerans KLTH0D03564g I
KNAG_0B01840 Kazachstania naganishii KNAG_0B01840 I
Kpol_1016p20 Vanderwaltozyma polyspora Kpol_1016p20 I
KUCA_T00004275001 Kuraishia capsulata KUCA_T00004275001 I
KUCA_T00004675001 Kuraishia capsulata KUCA_T00004675001 I
LALA0_S03e00276g Lachancea lanzarotensis LALA0_S03e00276g I
LELG_00667 Lodderomyces elongisporus LELG_00667 I
LELG_01997 Lodderomyces elongisporus LELG_01997 I
M437DRAFT_48354 Aureobasidium melanogenum M437DRAFT_48354 I
M438DRAFT_266991 Aureobasidium pullulans M438DRAFT_266991 I
MAC_01154 Metarhizium acridum MAC_01154 I
MAJ_04331 Metarhizium majus MAJ_04331 I
MAM_07132 Metarhizium album MAM_07132 I
MANI_010830 Metarhizium anisopliae MANI_010830 I
MAPG_02877 Magnaporthe poae MAPG_02877 I
MBM_00482 Marssonina brunnea MBM_00482 I
MBR_01591 Metarhizium brunneum MBR_01591 I
MCYG_02995 Arthroderma otae MCYG_02995 I
MGG_04108 Magnaporthe oryzae MGG_04108 I
MGU_02269 Metarhizium guizhouense MGU_02269 I
MGYG_00169 Microsporum gypseum MGYG_00169 I
MPH_02048 Macrophomina phaseolina MPH_02048 I
MYCFIDRAFT_47796 Pseudocercospora fijiensis MYCFIDRAFT_47796 I
Mycgr3G66501 Zymoseptoria tritici Mycgr3G66501 I
MYCTH_2300537 Myceliophthora thermophila MYCTH_2300537 I
NCAS_0C00390 Naumovozyma castellii NCAS_0C00390 I
NDAI_0K00390 Naumovozyma dairenensis NDAI_0K00390 I
NechaG41465 Fusarium solani NechaG41465 I
NEUTE1DRAFT_127465 Neurospora tetrasperma NEUTE1DRAFT_127465 I
OCS_05092 Ophiocordyceps sinensis OCS_05092 I
OIDMADRAFT_40403 Oidiodendron maius OIDMADRAFT_40403 I
PAAG_03745 Paracoccidioides sp lutzii PAAG_03745 I
PAAG_11872 Paracoccidioides sp lutzii PAAG_11872 I
PABG_00794 Paracoccidioides brasiliensis PABG_00794 I
PABG_04235 Paracoccidioides brasiliensis PABG_04235 I
PAS_chr2-1_0757 Komagataella pastoris PAS_chr2-1_0757 I
PAS_chr4_0540 Komagataella pastoris PAS_chr4_0540 I
PCH_Pc13g12510 Penicillium rubens PCH_Pc13g12510 I
PDE_00198 Penicillium oxalicum PDE_00198 I
PDIP_26660 Penicillium digitatum PDIP_26660 I
PEX1_082400 Penicillium expansum PEX1_082400 I
PFICI_07248 Pestalotiopsis fici PFICI_07248 I
PGUG_01292 Meyerozyma guilliermondii PGUG_01292 I
PICST_31755 Scheffersomyces stipitis PICST_31755 I
PICST_622 Scheffersomyces stipitis PICST_622 I
PITC_056580 Penicillium italicum PITC_056580 I
PODANS_2_2140 Podospora anserina PODANS_2_2140 I
PV04_10755 Capronia semiimmersa PV04_10755 I
PV06_08403 Exophiala oligosperma PV06_08403 I
PV07_12426 Cladophialophora immunda PV07_12426 I
PV08_06719 Exophiala spinifera PV08_06719 I
PV10_00718 Exophiala mesophila PV10_00718 I
PV10_01410 Exophiala mesophila PV10_01410 I
PVAR5_8553 Byssochlamys spectabilis PVAR5_8553 I
S40285_06249 Stachybotrys chlorohalonata S40285_06249 I
S40288_04897 Stachybotrys chartarum S40288_04897 I
SEPMUDRAFT_146690 Sphaerulina musiva SEPMUDRAFT_146690 I
SKUD_207003 Saccharomyces kudriavzevii SKUD_207003 I
SMAC_06552 Sordaria macrospora SMAC_06552 I
SPAPADRAFT_154694 Spathaspora passalidarum SPAPADRAFT_154694 I
SPBR_00143 Sporothrix brasiliensis SPBR_00143 I
SS1G_10339 Sclerotinia sclerotiorum SS1G_10339 I
SU7_1759 Saccharomyces arboricola SU7_1759 I
TDEL_0B00530 Torulaspora delbrueckii TDEL_0B00530 I
TEQG_08271 Trichophyton equinum TEQG_08271 I
TESG_07986 Trichophyton tonsurans TESG_07986 I
THITE_2106669 Thielavia terrestris THITE_2106669 I
TPHA_0I02820 Tetrapisispora phaffii TPHA_0I02820 I
TRIATDRAFT_221379 Trichoderma atroviride TRIATDRAFT_221379 I
TRIREDRAFT_49232 Trichoderma reesei TRIREDRAFT_49232 I
TRIVIDRAFT_166933 Trichoderma virens TRIVIDRAFT_166933 I
TRV_01331 Trichophyton verrucosum TRV_01331 I
U727_0043367091 Penicillium solitum U727_0043367091 I
UCREL1_9979 Eutypa lata UCREL1_9979 I
UCRNP2_919 Neofusicoccum parvum UCRNP2_919 I
UCRPA7_1587 Togninia minima UCRPA7_1587 I
UREG_04565 Uncinocarpus reesii UREG_04565 I
UV8b_3025 Ustilaginoidea virens UV8b_3025 I
V499_01421 Pseudogymnoascus pannorum V499_01421 I
V499_08426 Pseudogymnoascus pannorum V499_08426 I
VDAG_00301 Verticillium dahliae VDAG_00301 I
VDBG_00686 Verticillium alfalfae VDBG_00686 I
VHEMI01993 Torrubiella hemipterigena VHEMI01993 I
W97_07114 Coniosporium apollinis W97_07114 I
X797_002104 Metarhizium robertsii X797_002104 I
YALI0_C19151g Yarrowia lipolytica YALI0_C19151g I
Z517_12110 Fonsecaea pedrosoi Z517_12110 I
Z518_06304 Rhinocladiella mackenziei Z518_06304 I
Z519_06020 Cladophialophora bantiana Z519_06020 I
ZBAI_00324 Zygosaccharomyces bailii ZBAI_00324 I
ZBAI_02613 Zygosaccharomyces bailii ZBAI_02613 I
ZBAI_07009 Zygosaccharomyces bailii ZBAI_07009 I
ZYRO0G14278g Zygosaccharomyces rouxii ZYRO0G14278g I
ZYRO0G15136g Zygosaccharomyces rouxii ZYRO0G15136g I
e_gw1.5.1078.1 Nectria haematococca e_gw1.5.1078.1 I
estExt_fgenesh2_pg.C_10678 Neurospora discreta estExt_fgenesh2_pg.C_10678 I
estExt_Genewise1.C_10162 Mycosphaerella fijiensis estExt_Genewise1.C_10162 I
estExt_Genewise1Plus.C_chr_12372 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_12372 I
fgenesh1_pg.C_chr_4.1000626 Pichia stipitis fgenesh1_pg.C_chr_4.1000626 I
gwh1.2.1.110.1 Pichia stipitis gwh1.2.1.110.1 I
Scas_Contig696.44 Saccharomyces castellii Scas_Contig696.44 I
11616_YJL089W Saccharomyces paradoxus 11616_YJL089W I
17487_YMR280C Saccharomyces mikatae 17487_YMR280C I
17891_YMR280C Saccharomyces paradoxus 17891_YMR280C I
19463_YMR280C Saccharomyces bayanus 19463_YMR280C I
estExt_fgenesh1_pm.C_60502 Cryphonectria parasitica estExt_fgenesh1_pm.C_60502 I
fgenesh1_pm.00083_#_404 Aspergillus carbonarius fgenesh1_pm.00083_#_404 I
KLTH0C03762g Kluyveromyces thermotolerans KLTH0C03762g I
KLTH0D03564g Kluyveromyces thermotolerans KLTH0D03564g I
Kwal_10232 Kluyveromyces waltii Kwal_10232 I
Pc13g12510 Penicillium chrysogenum Pc13g12510 I
SAKL0D01342g Lachancea kluyveri SAKL0D01342g I
SAKL0D05654g Lachancea kluyveri SAKL0D05654g I
XP_002491690.1 Pichia pastoris XP_002491690.1 I
XP_002493979.1 Pichia pastoris XP_002493979.1 I