Pavir.Bb00642 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Bb00642 T050695_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.888 0.941
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.888 0.941
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.875 0.863
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.875 0.863
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.875 0.863
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.862 0.843
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.862 0.843
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.862 0.804
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.862 0.804
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.851 0.804
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.851 0.784
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.851 0.784
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.842 0.765
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb00642.1.p bHLH 132 182

Links

Other bHLH family TFs
Other Panicum virgatum TFs

858 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MAM_06565 Metarhizium album MAM_06565 I
estExt_fgenesh1_pg.C_sca_8_chr1_1_00138 Nectria haematococca estExt_fgenesh1_pg.C_sca_8_chr1_1_00138 I
X797_008956 Metarhizium robertsii X797_008956 I
VHEMI01959 Torrubiella hemipterigena VHEMI01959 I
VDAG_07704 Verticillium dahliae VDAG_07704 I
PFICI_14901 Pestalotiopsis fici PFICI_14901 I
NechaG98518 Fusarium solani NechaG98518 I
MGU_09148 Metarhizium guizhouense MGU_09148 I
MBR_06676 Metarhizium brunneum MBR_06676 I
MANI_019125 Metarhizium anisopliae MANI_019125 I
CFIO01_13633 Colletotrichum fioriniae CFIO01_13633 I
MAJ_07700 Metarhizium majus MAJ_07700 I
MAC_05787 Metarhizium acridum MAC_05787 I
GLRG_10273 Colletotrichum graminicola GLRG_10273 I
F503_00471 Ophiostoma piceae uamh F503_00471 I
Cob_08365 Colletotrichum orbiculare Cob_08365 I
CMQ_6814 Grosmannia clavigera CMQ_6814 I
CH063_01030 Colletotrichum higginsianum CH063_01030 I
CGGC5_12854 Colletotrichum gloeosporioides CGGC5_12854 I
HMPREF1624_08666 Sporothrix schenckii HMPREF1624_08666 N