Cmyd_10014527 (Chelonia mydas)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Cmyd_10014527 T070090_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Batf
M08829_2.00 		Mus musculus
NWSASTCAWHNNDDDANH
DNTHHHNNDWTGASTSWN		 Misc
Kulakovskiy et al.(2013)
BATF_MOUSE.H11MO.0.A 		0.866 0.889
Batf
M09495_2.00 		Mus musculus
VTGASTCABH
DVTGASTCAB		 Misc
Heinz et al.(2010)
Th17-BATF_GSE39756 		0.866 0.889
BATF
M04307_2.00 		Homo sapiens
NVVYGMCACN
NGTGKCRBBN		 SELEX
Yin et al.(2017)
BATF_FL_HT-SELEX 		0.855 0.873
BATF
M07821_2.00 		Homo sapiens
TBASTCAWWNYDRRA
TYYHRNWWTGASTVA		 ChIP-seq
Gerstein et al.(2012)
GM12878_BATF_HudsonAlpha 		0.855 0.873
BATF
M08799_2.00 		Homo sapiens
NWBASTCAWWHHRRRAVH
DBTYYYDDWWTGASTVWN		 Misc
Kulakovskiy et al.(2013)
BATF_HUMAN.H11MO.0.A 		0.855 0.873
BATF
M09971_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_01 		0.855 0.873
BATF
M09972_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_02 		0.855 0.873
BATF
M09973_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_03 		0.855 0.873
BATF
M09974_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_04 		0.855 0.873
BATF
M04308_2.00 		Homo sapiens
NVVYGACACN
NGTGTCRBBN		 SELEX
Yin et al.(2017)
BATF_FL_Methyl-HT-SELEX 		0.855 0.873
BATF3
M02833_2.00 		Homo sapiens
YGATGACGTCATCA
TGATGACGTCATCR		 SELEX
Jolma et al.(2013)
BATF3_1 		0.822 0.667
BATF3
M04268_2.00 		Homo sapiens
BRTGACGTCABN
NVTGACGTCAYV		 SELEX
Yin et al.(2017)
BATF3_eDBD_HT-SELEX 		0.822 0.667
BATF3
M04270_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
BATF3_FL_HT-SELEX 		0.822 0.667
BATF3
M04025_2.00 		Homo sapiens
GRTGACGTCAYC
GRTGACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
BATF3.1 		0.822 0.667
BATF3
M04026_2.00 		Homo sapiens
GRTGACGTGGS
SCCACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
BATF3.2 		0.822 0.667
BATF3
M08794_2.00 		Homo sapiens
NHSTCADWNDGAAASHN
NDSTTTCHNWHTGASDN		 Misc
Kulakovskiy et al.(2013)
BATF3_HUMAN.H11MO.0.B 		0.822 0.667
BATF3
M09962_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF3_02 		0.822 0.667
BATF3
M04269_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
BATF3_eDBD_Methyl-HT-SELEX 		0.822 0.667
BATF3
M04271_2.00 		Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN		 SELEX
Yin et al.(2017)
BATF3_FL_Methyl-HT-SELEX 		0.822 0.667
Batf3
M08826_2.00 		Mus musculus
NHSTCADWNDGAAASHN
NDSTTTCHNWHTGASDN		 Misc
Kulakovskiy et al.(2013)
BATF3_MOUSE.H11MO.0.A 		0.814 0.619
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10014527 bZIP 26 88

Links

Other bZIP family TFs
Other Chelonia mydas TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK01630.1 Cannabis sativa PK01630.1 D
Cla006707 Citrullus lanatus Cla006707 I
chr2.CM0002.120.nc Lotus japonicus chr2.CM0002.120.nc I
SapurV1A.0061s0470 Salix purpurea SapurV1A.0061s0470 I
orange1.1g023629m.g Citrus sinensis orange1.1g023629m.g I
Lus10028978.g Linum usitatissimum Lus10028978.g I
Lus10007502.g Linum usitatissimum Lus10007502.g I
Gorai.012G078100 Gossypium raimondii Gorai.012G078100 I
Gorai.011G292100 Gossypium raimondii Gorai.011G292100 I
gene21000-v1.0-hybrid Fragaria vesca gene21000-v1.0-hybrid I
evm.TU.supercontig_19.156 Carica papaya evm.TU.supercontig_19.156 I
Eucgr.J00190 Eucalyptus grandis Eucgr.J00190 I
Ciclev10032356m.g Citrus clementina Ciclev10032356m.g I
Cucsa.136730 Cucumis sativus Cucsa.136730 I
cassava37862.valid.m1 Manihot esculenta cassava37862.valid.m1 I
29814.m000735 Ricinus communis 29814.m000735 I
Bra000177 Brassica rapa Bra000177 I
Ca_13402 Cicer arietinum Ca_13402 I
VIT_13s0067g01350 Vitis vinifera VIT_13s0067g01350 I
TCM_042475 Theobroma cacao TCM_042475 I
Solyc03g095980.2 Solanum lycopersicum Solyc03g095980.2 I
PRUPE_ppa010134mg Prunus persica PRUPE_ppa010134mg I
POPTR_0010s19400 Populus trichocarpa POPTR_0010s19400 I
POPTR_0008s07090 Populus trichocarpa POPTR_0008s07090 I
PGSC0003DMG400027725 Solanum tuberosum PGSC0003DMG400027725 I
PGSC0003DMG400015659 Solanum tuberosum PGSC0003DMG400015659 I
MTR_3g070970 Medicago truncatula MTR_3g070970 I
GLYMA18G02940 Glycine max GLYMA18G02940 I
GLYMA11G35480 Glycine max GLYMA11G35480 I
GLYMA02G42570 Glycine max GLYMA02G42570 I
fgenesh2_kg.108__1__AT2G40200.1 Arabidopsis lyrata fgenesh2_kg.108__1__AT2G40200.1 I