Gfo_R012905 (Geospiza fortis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Gfo_R012905 T070223_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Batf
M08829_2.00 		Mus musculus
NWSASTCAWHNNDDDANH
DNTHHHNNDWTGASTSWN		 Misc
Kulakovskiy et al.(2013)
BATF_MOUSE.H11MO.0.A 		0.866 0.873
Batf
M09495_2.00 		Mus musculus
VTGASTCABH
DVTGASTCAB		 Misc
Heinz et al.(2010)
Th17-BATF_GSE39756 		0.866 0.873
BATF
M04307_2.00 		Homo sapiens
NVVYGMCACN
NGTGKCRBBN		 SELEX
Yin et al.(2017)
BATF_FL_HT-SELEX 		0.855 0.857
BATF
M07821_2.00 		Homo sapiens
TBASTCAWWNYDRRA
TYYHRNWWTGASTVA		 ChIP-seq
Gerstein et al.(2012)
GM12878_BATF_HudsonAlpha 		0.855 0.857
BATF
M08799_2.00 		Homo sapiens
NWBASTCAWWHHRRRAVH
DBTYYYDDWWTGASTVWN		 Misc
Kulakovskiy et al.(2013)
BATF_HUMAN.H11MO.0.A 		0.855 0.857
BATF
M09971_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_01 		0.855 0.857
BATF
M09972_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_02 		0.855 0.857
BATF
M09973_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_03 		0.855 0.857
BATF
M09974_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF_04 		0.855 0.857
BATF
M04308_2.00 		Homo sapiens
NVVYGACACN
NGTGTCRBBN		 SELEX
Yin et al.(2017)
BATF_FL_Methyl-HT-SELEX 		0.855 0.857
BATF3
M02833_2.00 		Homo sapiens
YGATGACGTCATCA
TGATGACGTCATCR		 SELEX
Jolma et al.(2013)
BATF3_1 		0.822 0.667
BATF3
M04268_2.00 		Homo sapiens
BRTGACGTCABN
NVTGACGTCAYV		 SELEX
Yin et al.(2017)
BATF3_eDBD_HT-SELEX 		0.822 0.667
BATF3
M04270_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
BATF3_FL_HT-SELEX 		0.822 0.667
BATF3
M04025_2.00 		Homo sapiens
GRTGACGTCAYC
GRTGACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
BATF3.1 		0.822 0.667
BATF3
M04026_2.00 		Homo sapiens
GRTGACGTGGS
SCCACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
BATF3.2 		0.822 0.667
BATF3
M08794_2.00 		Homo sapiens
NHSTCADWNDGAAASHN
NDSTTTCHNWHTGASDN		 Misc
Kulakovskiy et al.(2013)
BATF3_HUMAN.H11MO.0.B 		0.822 0.667
BATF3
M09962_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BATF3_02 		0.822 0.667
BATF3
M04269_2.00 		Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN		 SELEX
Yin et al.(2017)
BATF3_eDBD_Methyl-HT-SELEX 		0.822 0.667
BATF3
M04271_2.00 		Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN		 SELEX
Yin et al.(2017)
BATF3_FL_Methyl-HT-SELEX 		0.822 0.667
Batf3
M08826_2.00 		Mus musculus
NHSTCADWNDGAAASHN
NDSTTTCHNWHTGASDN		 Misc
Kulakovskiy et al.(2013)
BATF3_MOUSE.H11MO.0.A 		0.814 0.619
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012905 bZIP 26 88

Links

Other bZIP family TFs
Other Geospiza fortis TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ovo Drosophila melanogaster FBgn0003028 D
lin-48 Caenorhabditis elegans WBGene00003033 D
AARA001055 Anopheles arabiensis AARA001055 I
ACHR004136 Anopheles christyi ACHR004136 I
LDEC009536 Leptinotarsa decemlineata LDEC009536 I
LCUP004963 Lucilia cuprina LCUP004963 I
HHAL005991-PA Halyomorpha halys HHAL005991-PA I
CLEC002514 Cimex lectularius CLEC002514 I
Sakowv30033343m.g Saccoglossus kowalevskii Sakowv30033343m.g I
Cflo_08035--XP_624482.2_APIME Camponotus floridanus Cflo_08035--XP_624482.2_APIME I
tetur157g00030 Tetranychus urticae tetur157g00030 I
tetur12g02860 Tetranychus urticae tetur12g02860 I
tetur12g02810 Tetranychus urticae tetur12g02810 I
tetur12g02770 Tetranychus urticae tetur12g02770 I
tetur12g02760 Tetranychus urticae tetur12g02760 I
tetur12g02740 Tetranychus urticae tetur12g02740 I
TC008099 Tribolium castaneum TC008099 I
SPU_012448 Strongylocentrotus purpuratus SPU_012448 I
ASTEI07557 Anopheles stephensi ASTEI07557 I
TELCIR_07985 Teladorsagia circumcincta TELCIR_07985 I
SBAD_0001064501 Soboliphyme baturini SBAD_0001064501 I
NECAME_03083 Necator americanus NECAME_03083 I
L898_g2421 Steinernema monticolum L898_g2421 I
HCOI01936300 Haemonchus contortus HCOI01936300 I
BTMF_0001741201 Brugia timori BTMF_0001741201 I
PPAI008669 Phlebotomus papatasi PPAI008669 I
MDOA012259 Musca domestica MDOA012259 I
AATE002741 Anopheles atroparvus AATE002741 I
ASIS014406 Anopheles sinensis ASIS014406 I
AMEM014020 Anopheles merus AMEM014020 I
AMEC022552 Anopheles melas AMEC022552 I
AFUN010393 Anopheles funestus AFUN010393 I
ADIR001008 Anopheles dirus ADIR001008 I
ACUA027175 Anopheles culicifacies ACUA027175 I
SINV17081 Solenopsis invicta SINV17081 I
CapteG147941 Capitella teleta CapteG147941 I
GF20355 Drosophila ananassae FBgn0097362 I
ovo Drosophila virilis FBgn0064309 I
CRE25436 Caenorhabditis remanei CRE25436 I
CPIJ018505 Culex quinquefasciatus CPIJ018505 I
CJA37604 Caenorhabditis japonica CJA37604 I
CJA03277 Caenorhabditis japonica CJA03277 I
CBN00506 Caenorhabditis brenneri CBN00506 I
CBG09216 Caenorhabditis briggsae CBG09216 I
GH24684 Drosophila grimshawi FBgn0132140 I
Bm3814 Brugia malayi Bm3814 I
BGIBMGA000988 Bombyx mori BGIBMGA000988 I
AGAP000114 Anopheles gambiae AGAP000114 I
ADAC004491 Anopheles darlingi ADAC004491 I
ACYPI003064 Acyrthosiphon pisum ACYPI003064 I
ACEP17857 Atta cephalotes ACEP17857 I
AAEL017521 Aedes aegypti AAEL017521 I
GB51354 Apis mellifera GB51354 I
CpipJ_CPIJ018505 Culex pipiens CpipJ_CPIJ018505 I
RPRC002781 Rhodnius prolixus RPRC002781 I
PHUM086430 Pediculus humanus PHUM086430 I
MCINX009401 Melitaea cinxia MCINX009401 I
L798_11303 Zootermopsis nevadensis L798_11303 I
KGM_02259 Danaus plexippus KGM_02259 I
ISCW013547 Ixodes scapularis ISCW013547 I
HMEL006827 Heliconius melpomene HMEL006827 I
SMAR006131 Strigamia maritima SMAR006131 I
GA22634 Drosophila pseudoobscura FBgn0244037 I
GE16381 Drosophila yakuba FBgn0233910 I
GK10250 Drosophila willistoni FBgn0212265 I
GD24377 Drosophila simulans FBgn0195718 I
GM12381 Drosophila sechellia FBgn0167318 I
GL26817 Drosophila persimilis FBgn0164398 I
GI21666 Drosophila mojavensis FBgn0144396 I