Pavir.Aa03436 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Aa03436 T072303_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BZIP68
M01770_2.00 		Arabidopsis thaliana
BMCASGBND
HNVCSTGKV		 PBM
Weirauch et al.(2014)
pTH8192 		0.854 0.703
BZIP68
M06752_2.00 		Arabidopsis thaliana
DNWKNHSACGTGGCR
YGCCACGTSDNMWNH		 Dap-seq
OMalley et al.(2016)
bZIP68_col_a 		0.854 0.703
PK23964.1
M01160_2.00 		Cannabis sativa
DNKMCACGTV
BACGTGKMNH		 PBM
Lambert et al.(2019)
pTH10151 		0.849 0.750
HBP1A_WHEAT
M10041_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HBP1A_Q2 		0.827 0.859
HBP1A_WHEAT
M10042_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HBPA1_Q6_01 		0.827 0.859
GBF1
M01783_2.00 		Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD		 PBM
Weirauch et al.(2014)
pTH7259 		0.821 0.719
GBF1
M09913_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_01 		0.821 0.719
GBF1
M09914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1F_Q2 		0.821 0.719
GBF1
M09915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2_01 		0.821 0.719
GBF1
M09916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2 		0.821 0.719
BZIP16
M06764_2.00 		Arabidopsis thaliana
DDWKVYSACGTGGCA
TGCCACGTSRBMWHH		 Dap-seq
OMalley et al.(2016)
bZIP16_colamp_a 		0.817 0.641
BZIP16
M06765_2.00 		Arabidopsis thaliana
DDWKVHSACGTGGCA
TGCCACGTSDBMWHH		 Dap-seq
OMalley et al.(2016)
bZIP16_col_v3a 		0.817 0.641
Q40645_ORYSA
M10050_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OSBZ8_Q6 		0.784 0.547
Q41109_PHAVU
M10078_2.00 		Phaseolus vulgaris Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ROM_Q2 		0.784 0.578
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa03436.1.p bZIP 248 311

Links

Other bZIP family TFs
Other Panicum virgatum TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.000
PK18312.1 Cannabis sativa PK18312.1 I 0.000
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.000
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.000
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.000
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.000
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.000
29269.m000250 Ricinus communis 29269.m000250 I 0.000
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.000
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.000
TCM_024873 Theobroma cacao TCM_024873 I 0.000
Sb07g027740 Sorghum bicolor Sb07g027740 I 0.000
Sb02g028420 Sorghum bicolor Sb02g028420 I 0.000
OS09G0491532 Oryza sativa OS09G0491532 I 0.000
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.000
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.000
BGIOSGA029541 Oryza indica BGIOSGA029541 I 0.000
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.000
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.000
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.000
OBART09G14800 Oryza barthii OBART09G14800 I 0.000
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.000
LPERR09G10900 Leersia perrieri LPERR09G10900 I 0.000
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.000
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.000
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.000
GRMZM2G307588 Zea mays GRMZM2G307588 I 0.000
GRMZM2G126018 Zea mays GRMZM2G126018 I 0.000
F775_10743 Aegilops tauschii F775_10743 I 0.000
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.000
OLONG_015903 Oryza longistaminata OLONG_015903 N 0.000