Pavir.Ba03287 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Ba03287 T072325_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EmBP-1
M02659_2.00 		Triticum aestivum
CCACGTSW
WSACGTGG		 SELEX
Mathelier et al.(2014)
MA0128.1 		0.875 0.781
EMBP1_WHEAT
M09921_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EMBP1_02 		0.875 0.781
EMBP1_WHEAT
M09922_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EMBP1_Q2 		0.875 0.781
GBF1
M01783_2.00 		Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD		 PBM
Weirauch et al.(2014)
pTH7259 		0.829 0.609
GBF1
M09913_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_01 		0.829 0.609
GBF1
M09914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1F_Q2 		0.829 0.609
GBF1
M09915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2_01 		0.829 0.609
GBF1
M09916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2 		0.829 0.609
PK09653.1
M01156_2.00 		Cannabis sativa
NNMCASVNNN
NNNBSTGKNN		 PBM
Lambert et al.(2019)
pTH10114 		0.812 0.656
TAF1_TOBAC
M10079_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_01 		0.805 0.609
TAF1_TOBAC
M10080_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_Q2 		0.805 0.609
BZIP68
M01770_2.00 		Arabidopsis thaliana
BMCASGBND
HNVCSTGKV		 PBM
Weirauch et al.(2014)
pTH8192 		0.805 0.656
BZIP68
M06752_2.00 		Arabidopsis thaliana
DNWKNHSACGTGGCR
YGCCACGTSDNMWNH		 Dap-seq
OMalley et al.(2016)
bZIP68_col_a 		0.805 0.656
BZIP16
M06764_2.00 		Arabidopsis thaliana
DDWKVYSACGTGGCA
TGCCACGTSRBMWHH		 Dap-seq
OMalley et al.(2016)
bZIP16_colamp_a 		0.805 0.625
BZIP16
M06765_2.00 		Arabidopsis thaliana
DDWKVHSACGTGGCA
TGCCACGTSDBMWHH		 Dap-seq
OMalley et al.(2016)
bZIP16_col_v3a 		0.805 0.625
Q40645_ORYSA
M10050_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OSBZ8_Q6 		0.800 0.641
Q41109_PHAVU
M10078_2.00 		Phaseolus vulgaris Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ROM_Q2 		0.800 0.688
CPRF1_PETCR
M10066_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF1_01 		0.794 0.641
CPRF1_PETCR
M10067_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF1_Q2 		0.794 0.641
CPRF1_PETCR
M10068_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF_Q2 		0.794 0.641
GBF3
M01779_2.00 		Arabidopsis thaliana
NBMCASSTVD
HBASSTGKVN		 PBM
Weirauch et al.(2014)
pTH7328 		0.794 0.688
GBF3
M06770_2.00 		Arabidopsis thaliana
DNHDNHSACGTGKMD
HKMCACGTSDNHDNH		 Dap-seq
OMalley et al.(2016)
GBF3_colamp 		0.794 0.688
GBF3
M06771_2.00 		Arabidopsis thaliana
DDWKVYSACGTGGCA
TGCCACGTSRBMWHH		 Dap-seq
OMalley et al.(2016)
GBF3_col 		0.794 0.688
PK23964.1
M01160_2.00 		Cannabis sativa
DNKMCACGTV
BACGTGKMNH		 PBM
Lambert et al.(2019)
pTH10151 		0.790 0.562
GBF2
M01781_2.00 		Arabidopsis thaliana
BMCASSNNN
NNNSSTGKV		 PBM
Weirauch et al.(2014)
pTH7258 		0.782 0.562
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba03287.1.p bZIP 257 320

Links

Other bZIP family TFs
Other Panicum virgatum TFs

272 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.000
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.000
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.000
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.000
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.000
Bo5g136850 Brassica oleracea Bo5g136850 I 0.000
Bo9g177060 Brassica oleracea Bo9g177060 I 0.000
Bra009119 Brassica rapa Bra009119 I 0.000
Bra034165 Brassica rapa Bra034165 I 0.000
Bra034866 Brassica rapa Bra034866 I 0.000
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.000
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.000
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.000
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.000
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.000
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.000
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.000
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.000
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.000
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.000
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.000
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.000
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.000
OBART05G25610 Oryza barthii OBART05G25610 I 0.000
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.000
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.000
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.000
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.000
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.000
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.000
OS05G0560600 Oryza sativa OS05G0560600 I 0.000
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.000
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.000
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.000
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.000
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.000
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.000
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.000
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.000
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.000
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.000
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.000
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.000
TCM_029209 Theobroma cacao TCM_029209 I 0.000
TCM_029695 Theobroma cacao TCM_029695 I 0.000
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.000
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.000
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.000
Ca_00394 Cicer arietinum Ca_00394 I 0.000
Ca_19877 Cicer arietinum Ca_19877 I 0.000
Cla015773 Citrullus lanatus Cla015773 I 0.000
Pm013209 Prunus mume Pm013209 I 0.000
29727.m000472 Ricinus communis 29727.m000472 I 0.000
29814.m000741 Ricinus communis 29814.m000741 I 0.000
29900.m001628 Ricinus communis 29900.m001628 I 0.000
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.000
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.000
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.000
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.000
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.000
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.000
mgf000047m Mimulus guttatus mgf000047m I 0.000
mgf006505m Mimulus guttatus mgf006505m I 0.000
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.000
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.000
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.000
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.000
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.000
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.000
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.000
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.000
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.000
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.000
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.000
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.000
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.000
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.000
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.000
MDP0000255104 Malus domestica MDP0000255104 I 0.000
MDP0000281471 Malus domestica MDP0000281471 I 0.000
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.000
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.000
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.000
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.000
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.000
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.000
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.000
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.000
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.000
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.000
Si010246m.g Setaria italica Si010246m.g N 0.000
TCM_042467 Theobroma cacao TCM_042467 N 0.000
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.000
Ca_02494 Cicer arietinum Ca_02494 N 0.000
mgf001239m Mimulus guttatus mgf001239m N 0.000
Aquca_039_00151 Aquilegia coerulea Aquca_039_00151 N 0.000
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.000
MDP0000097759 Malus domestica MDP0000097759 N 0.000
MDP0000943251 Malus domestica MDP0000943251 N 0.000
PK20477.1 Cannabis sativa PK20477.1 N 0.000
PK22475.1 Cannabis sativa PK22475.1 N 0.000