Pavir.Da01931 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Da01931 T072360_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF3
M01782_2.00 		Arabidopsis thaliana
ACACGTGT
ACACGTGT		 PBM
Weirauch et al.(2014)
pTH7240 		0.805 0.742
ABF3
M09912_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF3_Q2 		0.805 0.742
OS08G0471950
M10047_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TRAB1_Q2 		0.797 0.661
ABF4
M01056_2.00 		Arabidopsis thaliana
NNMCACGTGKNN
NNMCACGTGKNN		 PBM
Sullivan et al.(2014)
pTH7315 		0.796 0.613
ABF4
M01057_2.00 		Arabidopsis thaliana
NDMYAVNWNN
NNWNBTRKHN		 PBM
Sullivan et al.(2014)
pTH7551 		0.796 0.613
ABF4
M09911_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF4_Q2 		0.796 0.613
ABF1
M01772_2.00 		Arabidopsis thaliana
NNMCACGTGNN
NNCACGTGKNN		 PBM
Weirauch et al.(2014)
pTH8837 		0.790 0.597
ABF1
M01773_2.00 		Arabidopsis thaliana
NMCACGTGKN
NMCACGTGKN		 PBM
Weirauch et al.(2014)
pTH8853 		0.790 0.597
ABF1
M02656_2.00 		Arabidopsis thaliana
BBBBBBBBGCCACGTGDYC
GRHCACGTGGCVVVVVVVV		 SELEX
Mathelier et al.(2014)
MA0570.1 		0.790 0.597
ABF1
M09906_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_01 		0.790 0.597
ABF1
M09907_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_02 		0.790 0.597
ABF1
M09908_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABF1_03 		0.790 0.597
PK18009.1
M01158_2.00 		Cannabis sativa
NNACACGTGN
NCACGTGTNN		 PBM
Lambert et al.(2019)
pTH10272 		0.786 0.613
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da01931.1.p bZIP 261 323

Links

Other bZIP family TFs
Other Panicum virgatum TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.000
30169.m006403 Ricinus communis 30169.m006403 I 0.000
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I 0.000
Ca_14007 Cicer arietinum Ca_14007 I 0.000
Ca_07284 Cicer arietinum Ca_07284 I 0.000
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.000
TRIUR3_33816 Triticum urartu TRIUR3_33816 I 0.000
TRIUR3_16394 Triticum urartu TRIUR3_16394 I 0.000
Traes_6DL_62A15AED6 Triticum aestivum Traes_6DL_62A15AED6 I 0.000
Traes_6BL_868408DFC Triticum aestivum Traes_6BL_868408DFC I 0.000
Traes_6AL_9437F730F Triticum aestivum Traes_6AL_9437F730F I 0.000
TRAES3BF135900010CFD_g Triticum aestivum TRAES3BF135900010CFD_g I 0.000
Traes_3AL_B68C491B0 Triticum aestivum Traes_3AL_B68C491B0 I 0.000
Si001123m.g Setaria italica Si001123m.g I 0.000
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I 0.000
Sb03g042860 Sorghum bicolor Sb03g042860 I 0.000
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.000
OS04G0489600 Oryza sativa OS04G0489600 I 0.000
OS01G0900800 Oryza sativa OS01G0900800 I 0.000
PDK_20s1546591g001 Phoenix dactylifera PDK_20s1546591g001 I 0.000
Eucgr.A00213 Eucalyptus grandis Eucgr.A00213 I 0.000
BHLH128 Arabidopsis thaliana AT1G05805 I 0.000
Thhalv10008050m.g Eutrema salsugineum Thhalv10008050m.g I 0.000
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.000
Pavir.J01306 Panicum virgatum Pavir.J01306 I 0.000
orange1.1g038558m.g Citrus sinensis orange1.1g038558m.g I 0.000
MDP0000307685 Malus domestica MDP0000307685 I 0.000
Lus10026733.g Linum usitatissimum Lus10026733.g I 0.000
Lus10025518.g Linum usitatissimum Lus10025518.g I 0.000
Cucsa.094340 Cucumis sativus Cucsa.094340 I 0.000
Ciclev10020681m.g Citrus clementina Ciclev10020681m.g I 0.000
Carubv10023498m.g Capsella rubella Carubv10023498m.g I 0.000
Carubv10009382m.g Capsella rubella Carubv10009382m.g I 0.000
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.000
Cagra.1671s0210 Capsella grandiflora Cagra.1671s0210 I 0.000
Bostr.25993s0551 Boechera stricta Bostr.25993s0551 I 0.000
Bostr.25219s0385 Boechera stricta Bostr.25219s0385 I 0.000
e_gw1.272.41.1 Physcomitrella patens e_gw1.272.41.1 I 0.000
F775_26506 Aegilops tauschii F775_26506 I 0.000
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.000
LPERR04G13560 Leersia perrieri LPERR04G13560 I 0.000
LPERR01G35240 Leersia perrieri LPERR01G35240 I 0.000
GSMUA_Achr8G32130_001 Musa acuminata GSMUA_Achr8G32130_001 I 0.000
GSMUA_Achr8G01370_001 Musa acuminata GSMUA_Achr8G01370_001 I 0.000
GSMUA_Achr1G27710_001 Musa acuminata GSMUA_Achr1G27710_001 I 0.000
GRMZM2G114873 Zea mays GRMZM2G114873 I 0.000
fgenesh2_kg.1__542__AT1G05805.1 Arabidopsis lyrata fgenesh2_kg.1__542__AT1G05805.1 I 0.000
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.000
F775_24576 Aegilops tauschii F775_24576 I 0.000
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I 0.000
BRADI2G57800 Brachypodium distachyon BRADI2G57800 I 0.000
Bra015456 Brassica rapa Bra015456 I 0.000
Bo5g007030 Brassica oleracea Bo5g007030 I 0.000
Bo5g006980 Brassica oleracea Bo5g006980 I 0.000
BGIOSGA016651 Oryza indica BGIOSGA016651 I 0.000
BGIOSGA004992 Oryza indica BGIOSGA004992 I 0.000
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I 0.000
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I 0.000
OPUNC04G14700 Oryza punctata OPUNC04G14700 I 0.000
OPUNC01G39450 Oryza punctata OPUNC01G39450 I 0.000
ONIVA04G15000 Oryza nivara ONIVA04G15000 I 0.000
ONIVA01G45730 Oryza nivara ONIVA01G45730 I 0.000
OMERI04G14260 Oryza meridionalis OMERI04G14260 I 0.000
OMERI01G37660 Oryza meridionalis OMERI01G37660 I 0.000
OLONG_004619 Oryza longistaminata OLONG_004619 I 0.000
ORUFI01G44010 Oryza rufipogon ORUFI01G44010 I 0.000
OGLUM01G44860 Oryza glumaepatula OGLUM01G44860 I 0.000
OBART04G16900 Oryza barthii OBART04G16900 I 0.000
OBART01G40680 Oryza barthii OBART01G40680 I 0.000
OB04G24170 Oryza brachyantha OB04G24170 I 0.000
OB01G49420 Oryza brachyantha OB01G49420 I 0.000
MTR_1g116790 Medicago truncatula MTR_1g116790 I 0.000
MLOC_20318 Hordeum vulgare MLOC_20318 I 0.000
MLOC_12058 Hordeum vulgare MLOC_12058 I 0.000