CpipJ_CPIJ007837 (Culex pipiens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 CpipJ_CPIJ007837 T077588_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Glis2
M00129_2.00 		Mus musculus
NKACCCCYYNN
NNRRGGGGTMN		 PBM
Badis et al.(2009)
Glis2_1757 		0.762 0.841
GLIS2
M02887_2.00 		Homo sapiens
KACCCCCCRCRDHG
CDHYGYGGGGGGTM		 SELEX
Jolma et al.(2013)
GLIS2_1 		0.762 0.841
GLIS2
M04449_2.00 		Homo sapiens
RCCCCCCRCRWHGH
DCDWYGYGGGGGGY		 SELEX
Yin et al.(2017)
GLIS2_eDBD_HT-SELEX 		0.762 0.841
GLIS2
M04450_2.00 		Homo sapiens
DCWHYGYDGGGGGT
ACCCCCHRCRDWGH		 SELEX
Yin et al.(2017)
GLIS2_eDBD_Methyl-HT-SELEX 		0.762 0.841
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ007837-RA C2H2 ZF 234 256
CpipJ_CPIJ007837-RA C2H2 ZF 262 286
CpipJ_CPIJ007837-RA C2H2 ZF 292 318

Links

Other C2H2 ZF family TFs
Other Culex pipiens TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F443_15102 Phytophthora parasitica F443_15102 N
fgenesh_scip_prom.28083.3324 Phytophthora lateralis fgenesh_scip_prom.28083.3324 N
fgenesh_scip_prom.46568.532 Phytophthora kernoviae fgenesh_scip_prom.46568.532 N
HpaG811344 Hyaloperonospora arabidopsidis HpaG811344 N
maker-pve_contig_551-fgenesh-gene-0.0 Pythium vexans maker-pve_contig_551-fgenesh-gene-0.0 N
Phyra75434 Phytophthora ramorum Phyra75434 N
Phyra85992 Phytophthora ramorum Phyra85992 N
Physo135095 Phytophthora sojae Physo135095 N
Physo135096 Phytophthora sojae Physo135096 N
Physo145373 Phytophthora sojae Physo145373 N
PITG_16850 Phytophthora infestans PITG_16850 N
PITG_16853 Phytophthora infestans PITG_16853 N
PYU1_G009717 Pythium ultimum PYU1_G009717 N
estExt_fgenesh1_kg.C_330028 Phytophthora capsici estExt_fgenesh1_kg.C_330028 N