STOP1 (Arabidopsis thaliana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AT1G34370 T080833_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00		 Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a		 (Direct) (Direct)
STOP1
M06802_2.00		 Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G34370.1 C2H2 ZF 333 355
AT1G34370.1 C2H2 ZF 354 385
AT1G34370.2 C2H2 ZF 333 355
AT1G34370.2 C2H2 ZF 354 385
AT1G34370.3 C2H2 ZF 123 145
AT1G34370.3 C2H2 ZF 144 175

Links

Other C2H2 ZF family TFs
Other Arabidopsis thaliana TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb10g030770 Sorghum bicolor Sb10g030770 N 0.000
ONIVA06G30950 Oryza nivara ONIVA06G30950 N 0.000
OPUNC03G02420 Oryza punctata OPUNC03G02420 N 0.000
OPUNC06G25510 Oryza punctata OPUNC06G25510 N 0.000
ORGLA03G0024300 Oryza glaberrima ORGLA03G0024300 N 0.000
ORGLA06G0236900 Oryza glaberrima ORGLA06G0236900 N 0.000
ORUFI03G02380 Oryza rufipogon ORUFI03G02380 N 0.000
ORUFI06G29930 Oryza rufipogon ORUFI06G29930 N 0.000
OS03G0133000 Oryza sativa OS03G0133000 N 0.000
OS06G0726300 Oryza sativa OS06G0726300 N 0.000
Sb01g048130 Sorghum bicolor Sb01g048130 N 0.000
ONIVA03G02250 Oryza nivara ONIVA03G02250 N 0.000
Si006994m.g Setaria italica Si006994m.g N 0.000
Si036757m.g Setaria italica Si036757m.g N 0.000
Traes_4BL_27B9E4CE6 Triticum aestivum Traes_4BL_27B9E4CE6 N 0.000
Traes_4DL_7CB8EC5A8 Triticum aestivum Traes_4DL_7CB8EC5A8 N 0.000
Traes_4DL_B29067862 Triticum aestivum Traes_4DL_B29067862 N 0.000
TRIUR3_18560 Triticum urartu TRIUR3_18560 N 0.000
TRIUR3_32216 Triticum urartu TRIUR3_32216 N 0.000
TRIUR3_33949 Triticum urartu TRIUR3_33949 N 0.000
Pavir.Ia04458 Panicum virgatum Pavir.Ia04458 N 0.000
Pavir.J24394 Panicum virgatum Pavir.J24394 N 0.000
LPERR03G02450 Leersia perrieri LPERR03G02450 N 0.000
BGIOSGA020507 Oryza indica BGIOSGA020507 N 0.000
F775_22440 Aegilops tauschii F775_22440 N 0.000
F775_22671 Aegilops tauschii F775_22671 N 0.000
GRMZM2G059428 Zea mays GRMZM2G059428 N 0.000
GRMZM2G074358 Zea mays GRMZM2G074358 N 0.000
GRMZM2G126817 Zea mays GRMZM2G126817 N 0.000
GSMUA_Achr3G00560_001 Musa acuminata GSMUA_Achr3G00560_001 N 0.000
GSMUA_Achr3G14720_001 Musa acuminata GSMUA_Achr3G14720_001 N 0.000
GSMUA_Achr5G19060_001 Musa acuminata GSMUA_Achr5G19060_001 N 0.000
GSMUA_Achr7G04030_001 Musa acuminata GSMUA_Achr7G04030_001 N 0.000
BGIOSGA011514 Oryza indica BGIOSGA011514 N 0.000
LPERR06G23420 Leersia perrieri LPERR06G23420 N 0.000
MLOC_65456 Hordeum vulgare MLOC_65456 N 0.000
OB03G12640 Oryza brachyantha OB03G12640 N 0.000
OBART03G02620 Oryza barthii OBART03G02620 N 0.000
OBART03G02630 Oryza barthii OBART03G02630 N 0.000
OGLUM03G02560 Oryza glumaepatula OGLUM03G02560 N 0.000
OGLUM06G29360 Oryza glumaepatula OGLUM06G29360 N 0.000
OLONG_016677 Oryza longistaminata OLONG_016677 N 0.000
OMERI03G02480 Oryza meridionalis OMERI03G02480 N 0.000
OMERI06G27920 Oryza meridionalis OMERI06G27920 N 0.000