ENSAMEG00000009640 (Ailuropoda melanoleuca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSAMEG00000009640 T086810_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLIS1
M02911_2.00 		Homo sapiens
MGACCCCCCACGWHGN
NCDWCGTGGGGGGTCK		 SELEX
Jolma et al.(2013)
GLIS1_1 		0.827 0.989
GLIS1
M04564_2.00 		Homo sapiens
BMCCCCCCRCVDHSH
DSDHBGYGGGGGGKV		 SELEX
Yin et al.(2017)
GLIS1_eDBD_HT-SELEX 		0.827 0.989
GLIS1
M08345_2.00 		Homo sapiens
SNSYSYRGGRGGBV
BVCCYCCYRSRSNS		 ChIP-seq
Schmitges et al.(2016)
Q8NBF1.MEME 		0.827 0.989
GLIS1
M04565_2.00 		Homo sapiens
DCWHNGTGGGGGGTV
BACCCCCCACNDWGH		 SELEX
Yin et al.(2017)
GLIS1_eDBD_Methyl-HT-SELEX 		0.827 0.989
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMEP00000010119 C2H2 ZF 230 257
ENSAMEP00000010119 C2H2 ZF 264 287
ENSAMEP00000010119 C2H2 ZF 293 317
ENSAMEP00000010119 C2H2 ZF 323 347

Links

Other C2H2 ZF family TFs
Other Ailuropoda melanoleuca TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_4BS_ED206A2BB Triticum aestivum Traes_4BS_ED206A2BB I
ORGLA12G0036800 Oryza glaberrima ORGLA12G0036800 I
ORUFI12G04380 Oryza rufipogon ORUFI12G04380 I
OS12G0162500 Oryza sativa OS12G0162500 I
POPTR_0005s21300 Populus trichocarpa POPTR_0005s21300 I
Sb05g003810 Sorghum bicolor Sb05g003810 I
Sb08g003940 Sorghum bicolor Sb08g003940 I
Si010549m.g Setaria italica Si010549m.g I
Si026605m.g Setaria italica Si026605m.g I
Traes_4AL_273ACCFFD Triticum aestivum Traes_4AL_273ACCFFD I
ORUFI11G03840 Oryza rufipogon ORUFI11G03840 I
Traes_4DS_FE97492F2 Triticum aestivum Traes_4DS_FE97492F2 I
Traes_5DL_841444545 Triticum aestivum Traes_5DL_841444545 I
TRIUR3_12877 Triticum urartu TRIUR3_12877 I
TRIUR3_31416 Triticum urartu TRIUR3_31416 I
Pavir.Ca00211 Panicum virgatum Pavir.Ca00211 I
Pavir.Ha01827 Panicum virgatum Pavir.Ha01827 I
Pavir.Hb01916 Panicum virgatum Pavir.Hb01916 I
LPERR11G03390 Leersia perrieri LPERR11G03390 I
OBART12G03760 Oryza barthii OBART12G03760 I
BGIOSGA037037 Oryza indica BGIOSGA037037 I
BRADI4G41890 Brachypodium distachyon BRADI4G41890 I
GRMZM2G079365 Zea mays GRMZM2G079365 I
GRMZM5G821024 Zea mays GRMZM5G821024 I
LPERR12G03530 Leersia perrieri LPERR12G03530 I
MLOC_71198 Hordeum vulgare MLOC_71198 I
OB11G13300 Oryza brachyantha OB11G13300 I
OB12G13750 Oryza brachyantha OB12G13750 I
OBART11G03920 Oryza barthii OBART11G03920 I
ORGLA11G0036500 Oryza glaberrima ORGLA11G0036500 I
OGLUM12G04480 Oryza glumaepatula OGLUM12G04480 I
OLONG_001598 Oryza longistaminata OLONG_001598 I
OMERI12G02030 Oryza meridionalis OMERI12G02030 I
ONIVA11G04030 Oryza nivara ONIVA11G04030 I
ONIVA12G03450 Oryza nivara ONIVA12G03450 I
OGLUM11G03630 Oryza glumaepatula OGLUM11G03630 N
Traes_5BL_4700CC358 Triticum aestivum Traes_5BL_4700CC358 N
OS11G0160500 Oryza sativa OS11G0160500 N
Pavir.Cb01934 Panicum virgatum Pavir.Cb01934 N
OPUNC11G03640 Oryza punctata OPUNC11G03640 N
BGIOSGA034853 Oryza indica BGIOSGA034853 N
OPUNC12G03640 Oryza punctata OPUNC12G03640 N