Gli1 (Dipodomys ordii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDORG00000007124 T092767_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.827 1.000
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.827 1.000
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.827 1.000
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.827 1.000
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.827 1.000
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.827 1.000
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.827 1.000
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.796 0.886
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.796 0.886
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.796 0.886
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.796 0.886
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.796 0.886
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.796 0.886
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.779 0.851
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.779 0.851
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.779 0.851
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.779 0.851
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.779 0.851
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.779 0.851
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.779 0.851
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.779 0.851
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.779 0.851
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000006679 C2H2 ZF 236 260
ENSDORP00000006679 C2H2 ZF 268 295
ENSDORP00000006679 C2H2 ZF 301 325
ENSDORP00000006679 C2H2 ZF 331 356
ENSDORP00000006679 C2H2 ZF 362 387

Links

Other C2H2 ZF family TFs
Other Dipodomys ordii TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF3 Arabidopsis thaliana AT1G50640 D 0.000
AMTR_s00002p00264660 Amborella trichopoda AMTR_s00002p00264660 I 0.000
BGIOSGA005557 Oryza indica BGIOSGA005557 I 0.000
BGIOSGA029071 Oryza indica BGIOSGA029071 I 0.000
Bo6g022410 Brassica oleracea Bo6g022410 I 0.000
Bo7g040820 Brassica oleracea Bo7g040820 I 0.000
Bra014924 Brassica rapa Bra014924 I 0.000
Bra018864 Brassica rapa Bra018864 I 0.000
BRADI2G21067 Brachypodium distachyon BRADI2G21067 I 0.000
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I 0.000
fgenesh2_kg.3__2537__AT3G23220.1 Arabidopsis lyrata fgenesh2_kg.3__2537__AT3G23220.1 I 0.000
GLYMA02G43500 Glycine max GLYMA02G43500 I 0.000
GLYMA02G46340 Glycine max GLYMA02G46340 I 0.000
GLYMA03G31640 Glycine max GLYMA03G31640 I 0.000
GLYMA06G44430 Glycine max GLYMA06G44430 I 0.000
GLYMA12G13315 Glycine max GLYMA12G13315 I 0.000
GLYMA14G02360 Glycine max GLYMA14G02360 I 0.000
GLYMA14G05470 Glycine max GLYMA14G05470 I 0.000
GRMZM2G020150 Zea mays GRMZM2G020150 I 0.000
GRMZM2G079653 Zea mays GRMZM2G079653 I 0.000
GRMZM2G146028 Zea mays GRMZM2G146028 I 0.000
GRMZM2G174347 Zea mays GRMZM2G174347 I 0.000
GRMZM2G175525 Zea mays GRMZM2G175525 I 0.000
GSMUA_Achr1G18230_001 Musa acuminata GSMUA_Achr1G18230_001 I 0.000
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.000
GSMUA_Achr3G29290_001 Musa acuminata GSMUA_Achr3G29290_001 I 0.000
GSMUA_Achr4G04060_001 Musa acuminata GSMUA_Achr4G04060_001 I 0.000
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I 0.000
GSMUA_Achr4G06660_001 Musa acuminata GSMUA_Achr4G06660_001 I 0.000
GSMUA_Achr4G11430_001 Musa acuminata GSMUA_Achr4G11430_001 I 0.000
GSMUA_Achr5G09940_001 Musa acuminata GSMUA_Achr5G09940_001 I 0.000
GSMUA_AchrUn_randomG06910_001 Musa acuminata GSMUA_AchrUn_randomG06910_001 I 0.000
LPERR02G05920 Leersia perrieri LPERR02G05920 I 0.000
LPERR02G27530 Leersia perrieri LPERR02G27530 I 0.000
LPERR08G14810 Leersia perrieri LPERR08G14810 I 0.000
MLOC_10878 Hordeum vulgare MLOC_10878 I 0.000
MTR_5g085070 Medicago truncatula MTR_5g085070 I 0.000
MTR_5g085100 Medicago truncatula MTR_5g085100 I 0.000
OBART02G33690 Oryza barthii OBART02G33690 I 0.000
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I 0.000
OGLUM02G34120 Oryza glumaepatula OGLUM02G34120 I 0.000
OMERI02G07840 Oryza meridionalis OMERI02G07840 I 0.000
OMERI02G32080 Oryza meridionalis OMERI02G32080 I 0.000
OMERI08G16840 Oryza meridionalis OMERI08G16840 I 0.000
ONIVA02G33420 Oryza nivara ONIVA02G33420 I 0.000
OPUNC02G05940 Oryza punctata OPUNC02G05940 I 0.000
OPUNC02G31100 Oryza punctata OPUNC02G31100 I 0.000
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I 0.000
ORGLA02G0291300 Oryza glaberrima ORGLA02G0291300 I 0.000
ORGLA08G0225800 Oryza glaberrima ORGLA08G0225800 I 0.000
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I 0.000
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I 0.000
PGSC0003DMG400014417 Solanum tuberosum PGSC0003DMG400014417 I 0.000
PGSC0003DMG400022305 Solanum tuberosum PGSC0003DMG400022305 I 0.000
POPTR_0001s36610 Populus trichocarpa POPTR_0001s36610 I 0.000
POPTR_0007s11080 Populus trichocarpa POPTR_0007s11080 I 0.000
PRUPE_ppa010804mg Prunus persica PRUPE_ppa010804mg I 0.000
PRUPE_ppa010893mg Prunus persica PRUPE_ppa010893mg I 0.000
Sb04g006080 Sorghum bicolor Sb04g006080 I 0.000
Sb07g025843 Sorghum bicolor Sb07g025843 I 0.000
Sb08g004260 Sorghum bicolor Sb08g004260 I 0.000
SELMODRAFT_131245 Selaginella moellendorffii SELMODRAFT_131245 I 0.000
SELMODRAFT_28277 Selaginella moellendorffii SELMODRAFT_28277 I 0.000
Si018144m.g Setaria italica Si018144m.g I 0.000
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I 0.000
Solyc07g064890.1 Solanum lycopersicum Solyc07g064890.1 I 0.000
Solyc10g006130.1 Solanum lycopersicum Solyc10g006130.1 I 0.000
TCM_030804 Theobroma cacao TCM_030804 I 0.000
VIT_07s0141g00690 Vitis vinifera VIT_07s0141g00690 I 0.000
VIT_12s0059g01460 Vitis vinifera VIT_12s0059g01460 I 0.000
VIT_19s0090g01080 Vitis vinifera VIT_19s0090g01080 I 0.000
Ca_17824 Cicer arietinum Ca_17824 I 0.000
Cla003319 Citrullus lanatus Cla003319 I 0.000
Cla005423 Citrullus lanatus Cla005423 I 0.000
Cla013723 Citrullus lanatus Cla013723 I 0.000
Pm011907 Prunus mume Pm011907 I 0.000
Pm014953 Prunus mume Pm014953 I 0.000
29640.m000403 Ricinus communis 29640.m000403 I 0.000
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.000
cassava43266.valid.m1 Manihot esculenta cassava43266.valid.m1 I 0.000
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I 0.000
Cucsa.042770 Cucumis sativus Cucsa.042770 I 0.000
Cucsa.139820 Cucumis sativus Cucsa.139820 I 0.000
Cucsa.190200 Cucumis sativus Cucsa.190200 I 0.000
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.000
e_gw1.124.59.1 Physcomitrella patens e_gw1.124.59.1 I 0.000
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I 0.000
estExt_gwp_gw1.C_1270048 Physcomitrella patens estExt_gwp_gw1.C_1270048 I 0.000
gw1.90.191.1 Physcomitrella patens gw1.90.191.1 I 0.000
mgf007166m Mimulus guttatus mgf007166m I 0.000
mgf016282m Mimulus guttatus mgf016282m I 0.000
Aquca_027_00311 Aquilegia coerulea Aquca_027_00311 I 0.000
Bostr.26675s0388 Boechera stricta Bostr.26675s0388 I 0.000
Cagra.0952s0001 Capsella grandiflora Cagra.0952s0001 I 0.000
Carubv10010284m.g Capsella rubella Carubv10010284m.g I 0.000
Ciclev10009361m.g Citrus clementina Ciclev10009361m.g I 0.000
Ciclev10016668m.g Citrus clementina Ciclev10016668m.g I 0.000
Ciclev10026032m.g Citrus clementina Ciclev10026032m.g I 0.000
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.000
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.000
evm.TU.supercontig_12.251 Carica papaya evm.TU.supercontig_12.251 I 0.000
evm.TU.supercontig_132.31 Carica papaya evm.TU.supercontig_132.31 I 0.000
gene01152-v1.0-hybrid Fragaria vesca gene01152-v1.0-hybrid I 0.000
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I 0.000
Gorai.002G092900 Gossypium raimondii Gorai.002G092900 I 0.000
Gorai.004G032500 Gossypium raimondii Gorai.004G032500 I 0.000
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I 0.000
Gorai.009G443400 Gossypium raimondii Gorai.009G443400 I 0.000
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I 0.000
Lus10029987.g Linum usitatissimum Lus10029987.g I 0.000
Lus10035329.g Linum usitatissimum Lus10035329.g I 0.000
Lus10043182.g Linum usitatissimum Lus10043182.g I 0.000
MDP0000236605 Malus domestica MDP0000236605 I 0.000
MDP0000243113 Malus domestica MDP0000243113 I 0.000
MDP0000310904 Malus domestica MDP0000310904 I 0.000
MDP0000457509 Malus domestica MDP0000457509 I 0.000
MDP0000542633 Malus domestica MDP0000542633 I 0.000
MDP0000629527 Malus domestica MDP0000629527 I 0.000
MDP0000744693 Malus domestica MDP0000744693 I 0.000
MDP0000839828 Malus domestica MDP0000839828 I 0.000
orange1.1g027990m.g Citrus sinensis orange1.1g027990m.g I 0.000
orange1.1g039390m.g Citrus sinensis orange1.1g039390m.g I 0.000
orange1.1g045783m.g Citrus sinensis orange1.1g045783m.g I 0.000
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I 0.000
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I 0.000
Pavir.J03216 Panicum virgatum Pavir.J03216 I 0.000
Pavir.J28880 Panicum virgatum Pavir.J28880 I 0.000
Pavir.J32690 Panicum virgatum Pavir.J32690 I 0.000
SapurV1A.0126s0320 Salix purpurea SapurV1A.0126s0320 I 0.000
SapurV1A.0126s0330 Salix purpurea SapurV1A.0126s0330 I 0.000
SapurV1A.0711s0020 Salix purpurea SapurV1A.0711s0020 I 0.000
Thhalv10011689m.g Eutrema salsugineum Thhalv10011689m.g I 0.000
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I 0.000
PK23186.1 Cannabis sativa PK23186.1 I 0.000
PK25211.1 Cannabis sativa PK25211.1 I 0.000
chr2.LjT24P12.30.nd Lotus japonicus chr2.LjT24P12.30.nd I 0.000
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.000