ENSGACG00000004834 (Gasterosteus aculeatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGACG00000004834 T095583_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.795 0.957
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.795 0.957
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.795 0.957
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.795 0.957
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.795 0.957
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.795 0.957
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.779 0.922
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.779 0.922
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.779 0.922
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.779 0.922
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.779 0.922
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.779 0.922
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.779 0.922
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.779 0.922
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.779 0.922
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.766 0.861
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.766 0.861
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.766 0.861
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.766 0.861
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.766 0.861
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.766 0.861
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.766 0.861
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000006391 C2H2 ZF 489 514
ENSGACP00000006391 C2H2 ZF 522 549
ENSGACP00000006391 C2H2 ZF 555 579
ENSGACP00000006391 C2H2 ZF 585 610
ENSGACP00000006391 C2H2 ZF 616 641

Links

Other C2H2 ZF family TFs
Other Gasterosteus aculeatus TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OS08G0200600 Oryza sativa OS08G0200600 N 0.000
OPUNC02G33860 Oryza punctata OPUNC02G33860 N 0.000
OPUNC06G22270 Oryza punctata OPUNC06G22270 N 0.000
OPUNC08G05520 Oryza punctata OPUNC08G05520 N 0.000
ORGLA02G0046100 Oryza glaberrima ORGLA02G0046100 N 0.000
ORGLA02G0320500 Oryza glaberrima ORGLA02G0320500 N 0.000
ORGLA06G0205600 Oryza glaberrima ORGLA06G0205600 N 0.000
ORGLA08G0051100 Oryza glaberrima ORGLA08G0051100 N 0.000
ORUFI02G05100 Oryza rufipogon ORUFI02G05100 N 0.000
ORUFI02G38340 Oryza rufipogon ORUFI02G38340 N 0.000
ORUFI06G26420 Oryza rufipogon ORUFI06G26420 N 0.000
ORUFI08G06500 Oryza rufipogon ORUFI08G06500 N 0.000
OS02G0810900 Oryza sativa OS02G0810900 N 0.000
OS06G0675600 Oryza sativa OS06G0675600 N 0.000
OPUNC02G04160 Oryza punctata OPUNC02G04160 N 0.000
Sb06g028800 Sorghum bicolor Sb06g028800 N 0.000
Si014180m.g Setaria italica Si014180m.g N 0.000
Traes_6AL_B272C86BE Triticum aestivum Traes_6AL_B272C86BE N 0.000
Traes_6AL_B92597EA9 Triticum aestivum Traes_6AL_B92597EA9 N 0.000
Traes_6BL_99F790D57 Triticum aestivum Traes_6BL_99F790D57 N 0.000
Traes_6DL_1ABE78799 Triticum aestivum Traes_6DL_1ABE78799 N 0.000
Traes_6DL_8A1342D56 Triticum aestivum Traes_6DL_8A1342D56 N 0.000
TRIUR3_23299 Triticum urartu TRIUR3_23299 N 0.000
TRIUR3_32754 Triticum urartu TRIUR3_32754 N 0.000
Lus10003548.g Linum usitatissimum Lus10003548.g N 0.000
Lus10033905.g Linum usitatissimum Lus10033905.g N 0.000
Pavir.Fb00532 Panicum virgatum Pavir.Fb00532 N 0.000
PDK_20s1665101g001 Phoenix dactylifera PDK_20s1665101g001 N 0.000
OBART02G05020 Oryza barthii OBART02G05020 N 0.000
BGIOSGA009257 Oryza indica BGIOSGA009257 N 0.000
BGIOSGA023457 Oryza indica BGIOSGA023457 N 0.000
BGIOSGA027481 Oryza indica BGIOSGA027481 N 0.000
F775_08585 Aegilops tauschii F775_08585 N 0.000
F775_17109 Aegilops tauschii F775_17109 N 0.000
F775_18200 Aegilops tauschii F775_18200 N 0.000
GRMZM2G156977 Zea mays GRMZM2G156977 N 0.000
GSMUA_Achr5G00500_001 Musa acuminata GSMUA_Achr5G00500_001 N 0.000
GSMUA_Achr6G31350_001 Musa acuminata GSMUA_Achr6G31350_001 N 0.000
LPERR08G05360 Leersia perrieri LPERR08G05360 N 0.000
MLOC_5165 Hordeum vulgare MLOC_5165 N 0.000
OB02G43380 Oryza brachyantha OB02G43380 N 0.000
OB08G15810 Oryza brachyantha OB08G15810 N 0.000
BGIOSGA007071 Oryza indica BGIOSGA007071 N 0.000
OBART02G36830 Oryza barthii OBART02G36830 N 0.000
OBART06G24550 Oryza barthii OBART06G24550 N 0.000
OBART08G05780 Oryza barthii OBART08G05780 N 0.000
OGLUM06G25850 Oryza glumaepatula OGLUM06G25850 N 0.000
OLONG_016454 Oryza longistaminata OLONG_016454 N 0.000
OMERI02G05870 Oryza meridionalis OMERI02G05870 N 0.000
OMERI02G34720 Oryza meridionalis OMERI02G34720 N 0.000
OMERI06G24740 Oryza meridionalis OMERI06G24740 N 0.000
ONIVA02G05190 Oryza nivara ONIVA02G05190 N 0.000
ONIVA02G35380 Oryza nivara ONIVA02G35380 N 0.000
ONIVA02G39640 Oryza nivara ONIVA02G39640 N 0.000
ONIVA08G05790 Oryza nivara ONIVA08G05790 N 0.000