ENSLACG00000005413 (Latimeria chalumnae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLACG00000005413 T097000_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00221_2.00 		Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF 		0.823 0.974
SNAI2
M02873_2.00 		Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1 		0.823 0.974
SNAI2
M04392_2.00 		Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX 		0.823 0.974
SNAI2
M04394_2.00 		Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX 		0.823 0.974
SNAI2
M08853_2.00 		Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A 		0.823 0.974
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.823 0.974
SNAI2
M10102_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01 		0.823 0.974
SNAI2
M10103_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02 		0.823 0.974
SNAI2
M10104_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6 		0.823 0.974
SNAI2
M00220_2.00 		Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E 		0.823 0.974
SNAI2
M04393_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX 		0.823 0.974
SNAI2
M04395_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX 		0.823 0.974
SNAI2
M00222_2.00 		Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I 		0.819 0.965
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.767 0.807
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000006099 C2H2 ZF 128 150
ENSLACP00000006099 C2H2 ZF 159 181
ENSLACP00000006099 C2H2 ZF 185 207
ENSLACP00000006099 C2H2 ZF 213 235
ENSLACP00000006099 C2H2 ZF 241 262

Links

Other C2H2 ZF family TFs
Other Latimeria chalumnae TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PIIN_03157 Piriformospora indica PIIN_03157 N
M422DRAFT_71920 Sphaerobolus stellatus M422DRAFT_71920 N
Moror_825 Moniliophthora roreri Moror_825 N
PaG_00960 Pseudozyma aphidis PaG_00960 N
PAN0_024c6129 Pseudozyma antarctica PAN0_024c6129 N
PAXRUDRAFT_821096 Paxillus rubicundulus PAXRUDRAFT_821096 N
PFL1_03819 Pseudozyma flocculosa PFL1_03819 N
PHACADRAFT_255607 Phanerochaete carnosa PHACADRAFT_255607 N
PHLGIDRAFT_82021 Phlebiopsis gigantea PHLGIDRAFT_82021 N
PHSY_007464 Pseudozyma hubeiensis PHSY_007464 N
M422DRAFT_180219 Sphaerobolus stellatus M422DRAFT_180219 N
PILCRDRAFT_823319 Piloderma croceum PILCRDRAFT_823319 N
PISMIDRAFT_670105 Pisolithus microcarpus PISMIDRAFT_670105 N
PLEOSDRAFT_1110570 Pleurotus ostreatus PLEOSDRAFT_1110570 N
PSEUBRA_SCAF13g01932 Pseudozyma brasiliensis PSEUBRA_SCAF13g01932 N
SCHCODRAFT_74719 Schizophyllum commune SCHCODRAFT_74719 N
sr15132 Sporisorium reilianum sr15132 N
UM04242 Ustilago maydis UM04242 N
fgenesh1_pg.C_scaffold_1000144 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_1000144 N
e_gw1.15.51.1 Tremella mesenterica e_gw1.15.51.1 N
GALMADRAFT_269832 Galerina marginata GALMADRAFT_269832 N
BN946_scf185014.g25 Trametes cinnabarina BN946_scf185014.g25 N
BOTBODRAFT_155106 Botryobasidium botryosum BOTBODRAFT_155106 N
CC1G_01048 Coprinopsis cinerea CC1G_01048 N
CERSUDRAFT_82708 Ceriporiopsis subvermispora CERSUDRAFT_82708 N
CNA08090 Cryptococcus neoformans CNA08090 N
CY34DRAFT_800522 Suillus luteus CY34DRAFT_800522 N
E5Q_03246 Mixia osmundae E5Q_03246 N
FIBRA_08487 Fibroporia radiculosa FIBRA_08487 N
FOMPIDRAFT_1025229 Fomitopsis pinicola FOMPIDRAFT_1025229 N
A1Q1_01006 Trichosporon asahii A1Q1_01006 N
GLOTRDRAFT_136812 Gloeophyllum trabeum GLOTRDRAFT_136812 N
GYMLUDRAFT_75242 Gymnopus luxurians GYMLUDRAFT_75242 N
JAAARDRAFT_31927 Jaapia argillacea JAAARDRAFT_31927 N
L804_01658 Cryptococcus gattii L804_01658 N
LACBIDRAFT_305811 Laccaria bicolor LACBIDRAFT_305811 N
M378DRAFT_187599 Amanita muscaria M378DRAFT_187599 N
M404DRAFT_992985 Pisolithus tinctorius M404DRAFT_992985 N
M408DRAFT_197963 Serendipita vermifera M408DRAFT_197963 N
M413DRAFT_15049 Hebeloma cylindrosporum M413DRAFT_15049 N