SP6 (Loxodonta africana)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLAFG00000010701 T097336_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sp1
M03682_2.00 		Drosophila melanogaster
HNGCCACGCCCARK
MYTGGGCGTGGCND		 SELEX
Nitta et al.(2015)
Sp1_1 		0.785 0.855
Sp1
M06117_2.00 		Drosophila melanogaster
DHYMCGCCCMY
RKGGGCGKRDH		 B1H
Zhu et al.(2011)
Sp1_SANGER_5_FBgn0020378 		0.785 0.855
Sp1
M06118_2.00 		Drosophila melanogaster
NKHHMCGCCCMYNN
NNRKGGGCGKDDMN		 B1H
Zhu et al.(2011)
Sp1_SOLEXA_2.5_FBgn0020378 		0.785 0.855
Sp5
M09016_2.00 		Mus musculus
CYCCKCCYHYHBCYYHBYYYHYHB
VDRDRRRVDRRGVDRDRGGMGGRG		 Misc
Kulakovskiy et al.(2013)
SP5_MOUSE.H11MO.0.C 		0.781 0.826
SP5
M10319_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP5_Q2 		0.781 0.826
SP8
M02898_2.00 		Homo sapiens
VMCACBCCCMCH
DGKGGGVGTGKB		 SELEX
Jolma et al.(2013)
SP8_1 		0.771 0.841
SP8
M04517_2.00 		Homo sapiens
NMCMCGCCCMYH
DRKGGGCGKGKN		 SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX 		0.771 0.841
SP9
M04645_2.00 		Homo sapiens
VMCMCGCCCMYH
DRKGGGCGKGKB		 SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX 		0.771 0.841
SP8
M04518_2.00 		Homo sapiens
RHCACGCCCMYH
DRKGGGCGTGDY		 SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX 		0.771 0.841
SP9
M04646_2.00 		Homo sapiens
RYCACGCCCMYH
DRKGGGCGTGRY		 SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX 		0.771 0.841
SP3
M02910_2.00 		Homo sapiens
VCCMCRCCCMY
RKGGGYGKGGB		 SELEX
Jolma et al.(2013)
SP3_1 		0.763 0.812
SP3
M04558_2.00 		Homo sapiens
NRCCACGCCCMYH
DRKGGGCGTGGYN		 SELEX
Yin et al.(2017)
SP3_eDBD_HT-SELEX 		0.763 0.812
SP3
M08920_2.00 		Homo sapiens
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN		 Misc
Kulakovskiy et al.(2013)
SP3_HUMAN.H11MO.0.B 		0.763 0.812
SP3
M10263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP3_Q3_01 		0.763 0.812
SP3
M10264_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP3_Q3 		0.763 0.812
SP3
M04559_2.00 		Homo sapiens
NRCCMCGCCCMCH
DGKGGGCGKGGYN		 SELEX
Yin et al.(2017)
SP3_eDBD_Methyl-HT-SELEX 		0.763 0.812
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000018620 C2H2 ZF 254 278
ENSLAFP00000018620 C2H2 ZF 284 308
ENSLAFP00000018620 C2H2 ZF 314 336

Links

Other C2H2 ZF family TFs
Other Loxodonta africana TFs

364 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ABF2 Arabidopsis thaliana AT1G45249 D 0.000
ABF1 Arabidopsis thaliana AT1G49720 D 0.000
ABI5 Arabidopsis thaliana AT2G36270 D 0.000
ABF4 Arabidopsis thaliana AT3G19290 D 0.000
ABF3 Arabidopsis thaliana AT4G34000 D 0.000
OS08G0471950 Oryza sativa OS08G0471950 D 0.000
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I 0.000
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I 0.000
BGIOSGA004837 Oryza indica BGIOSGA004837 I 0.000
BGIOSGA005551 Oryza indica BGIOSGA005551 I 0.000
BGIOSGA022536 Oryza indica BGIOSGA022536 I 0.000
BGIOSGA028831 Oryza indica BGIOSGA028831 I 0.000
BGIOSGA030899 Oryza indica BGIOSGA030899 I 0.000
BGIOSGA040605 Oryza indica BGIOSGA040605 I 0.000
Bo1g007700 Brassica oleracea Bo1g007700 I 0.000
Bo1g114840 Brassica oleracea Bo1g114840 I 0.000
Bo3g073080 Brassica oleracea Bo3g073080 I 0.000
Bo5g115300 Brassica oleracea Bo5g115300 I 0.000
Bo6g006970 Brassica oleracea Bo6g006970 I 0.000
Bo6g018480 Brassica oleracea Bo6g018480 I 0.000
Bo7g116570 Brassica oleracea Bo7g116570 I 0.000
Bra011485 Brassica rapa Bra011485 I 0.000
Bra018800 Brassica rapa Bra018800 I 0.000
Bra022409 Brassica rapa Bra022409 I 0.000
Bra037533 Brassica rapa Bra037533 I 0.000
Bra040260 Brassica rapa Bra040260 I 0.000
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I 0.000
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I 0.000
F775_32479 Aegilops tauschii F775_32479 I 0.000
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I 0.000
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I 0.000
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I 0.000
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I 0.000
GLYMA04G04170 Glycine max GLYMA04G04170 I 0.000
GLYMA06G04353 Glycine max GLYMA06G04353 I 0.000
GLYMA07G33600 Glycine max GLYMA07G33600 I 0.000
GLYMA13G22061 Glycine max GLYMA13G22061 I 0.000
GRMZM2G002075 Zea mays GRMZM2G002075 I 0.000
GRMZM2G033413 Zea mays GRMZM2G033413 I 0.000
GRMZM2G157722 Zea mays GRMZM2G157722 I 0.000
GRMZM2G168079 Zea mays GRMZM2G168079 I 0.000
GRMZM2G478417 Zea mays GRMZM2G478417 I 0.000
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I 0.000
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I 0.000
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I 0.000
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I 0.000
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I 0.000
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I 0.000
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I 0.000
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I 0.000
LPERR01G32620 Leersia perrieri LPERR01G32620 I 0.000
LPERR02G27610 Leersia perrieri LPERR02G27610 I 0.000
LPERR06G06440 Leersia perrieri LPERR06G06440 I 0.000
LPERR08G14740 Leersia perrieri LPERR08G14740 I 0.000
LPERR09G09170 Leersia perrieri LPERR09G09170 I 0.000
MLOC_34679 Hordeum vulgare MLOC_34679 I 0.000
MLOC_66546 Hordeum vulgare MLOC_66546 I 0.000
MTR_3g101780 Medicago truncatula MTR_3g101780 I 0.000
MTR_4g085910 Medicago truncatula MTR_4g085910 I 0.000
MTR_7g104480 Medicago truncatula MTR_7g104480 I 0.000
OB01G46760 Oryza brachyantha OB01G46760 I 0.000
OB02G40680 Oryza brachyantha OB02G40680 I 0.000
OB06G16510 Oryza brachyantha OB06G16510 I 0.000
OB08G24950 Oryza brachyantha OB08G24950 I 0.000
OB09G19140 Oryza brachyantha OB09G19140 I 0.000
OBART01G37980 Oryza barthii OBART01G37980 I 0.000
OBART02G33770 Oryza barthii OBART02G33770 I 0.000
OBART06G07070 Oryza barthii OBART06G07070 I 0.000
OBART08G17810 Oryza barthii OBART08G17810 I 0.000
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I 0.000
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I 0.000
OGLUM06G07500 Oryza glumaepatula OGLUM06G07500 I 0.000
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I 0.000
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I 0.000
OLONG_000475 Oryza longistaminata OLONG_000475 I 0.000
OLONG_001053 Oryza longistaminata OLONG_001053 I 0.000
OLONG_014546 Oryza longistaminata OLONG_014546 I 0.000
OMERI01G34950 Oryza meridionalis OMERI01G34950 I 0.000
OMERI02G32150 Oryza meridionalis OMERI02G32150 I 0.000
OMERI06G08210 Oryza meridionalis OMERI06G08210 I 0.000
OMERI09G10130 Oryza meridionalis OMERI09G10130 I 0.000
ONIVA02G33490 Oryza nivara ONIVA02G33490 I 0.000
ONIVA04G25730 Oryza nivara ONIVA04G25730 I 0.000
ONIVA06G08350 Oryza nivara ONIVA06G08350 I 0.000
ONIVA08G19830 Oryza nivara ONIVA08G19830 I 0.000
OPUNC01G36800 Oryza punctata OPUNC01G36800 I 0.000
OPUNC06G06690 Oryza punctata OPUNC06G06690 I 0.000
OPUNC08G15700 Oryza punctata OPUNC08G15700 I 0.000
OPUNC09G11090 Oryza punctata OPUNC09G11090 I 0.000
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I 0.000
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I 0.000
ORGLA06G0066000 Oryza glaberrima ORGLA06G0066000 I 0.000
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I 0.000
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I 0.000
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I 0.000
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I 0.000
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I 0.000
ORUFI12G20810 Oryza rufipogon ORUFI12G20810 I 0.000
OS01G0859300 Oryza sativa OS01G0859300 I 0.000
BZIP23 Oryza sativa OS02G0766700 I 0.000
BZIP46 Oryza sativa OS06G0211200 I 0.000
OS09G0456200 Oryza sativa OS09G0456200 I 0.000
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I 0.000
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I 0.000
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I 0.000
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I 0.000
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I 0.000
ABI5 Populus trichocarpa POPTR_0006s08300 I 0.000
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I 0.000
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I 0.000
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I 0.000
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I 0.000
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I 0.000
Sb04g034190 Sorghum bicolor Sb04g034190 I 0.000
Sb06g026410 Sorghum bicolor Sb06g026410 I 0.000
Sb07g022965 Sorghum bicolor Sb07g022965 I 0.000
Sb08g003760 Sorghum bicolor Sb08g003760 I 0.000
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I 0.000
Si006889m.g Setaria italica Si006889m.g I 0.000
Si013904m.g Setaria italica Si013904m.g I 0.000
Si017618m.g Setaria italica Si017618m.g I 0.000
Si030114m.g Setaria italica Si030114m.g I 0.000
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I 0.000
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I 0.000
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I 0.000
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I 0.000
TCM_007074 Theobroma cacao TCM_007074 I 0.000
TCM_022574 Theobroma cacao TCM_022574 I 0.000
TCM_033824 Theobroma cacao TCM_033824 I 0.000
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I 0.000
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I 0.000
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I 0.000
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I 0.000
TRIUR3_26781 Triticum urartu TRIUR3_26781 I 0.000
TRIUR3_31111 Triticum urartu TRIUR3_31111 I 0.000
TRIUR3_33995 Triticum urartu TRIUR3_33995 I 0.000
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I 0.000
DPBF2 Vitis vinifera VIT_06s0080g00340 I 0.000
ABF2 Vitis vinifera VIT_18s0001g10450 I 0.000
Ca_00791 Cicer arietinum Ca_00791 I 0.000
Ca_01548 Cicer arietinum Ca_01548 I 0.000
Ca_06458 Cicer arietinum Ca_06458 I 0.000
Cla016272 Citrullus lanatus Cla016272 I 0.000
Cla022926 Citrullus lanatus Cla022926 I 0.000
Pm001315 Prunus mume Pm001315 I 0.000
Pm005288 Prunus mume Pm005288 I 0.000
Pm021430 Prunus mume Pm021430 I 0.000
29625.m000702 Ricinus communis 29625.m000702 I 0.000
29801.m003176 Ricinus communis 29801.m003176 I 0.000
30055.m001548 Ricinus communis 30055.m001548 I 0.000
30170.m013868 Ricinus communis 30170.m013868 I 0.000
cassava11518.m1 Manihot esculenta cassava11518.m1 I 0.000
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I 0.000
cassava16074.m1 Manihot esculenta cassava16074.m1 I 0.000
cassava17300.m1 Manihot esculenta cassava17300.m1 I 0.000
cassava32856.m1 Manihot esculenta cassava32856.m1 I 0.000
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I 0.000
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I 0.000
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I 0.000
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I 0.000
Cucsa.219780 Cucumis sativus Cucsa.219780 I 0.000
Cucsa.241090 Cucumis sativus Cucsa.241090 I 0.000
Cucsa.385090 Cucumis sativus Cucsa.385090 I 0.000
Cucsa.396070 Cucumis sativus Cucsa.396070 I 0.000
mgf002047m Mimulus guttatus mgf002047m I 0.000
mgf002176m Mimulus guttatus mgf002176m I 0.000
mgf007524m Mimulus guttatus mgf007524m I 0.000
mgf014602m Mimulus guttatus mgf014602m I 0.000
mgf020824m Mimulus guttatus mgf020824m I 0.000
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I 0.000
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I 0.000
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I 0.000
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I 0.000
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I 0.000
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I 0.000
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I 0.000
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I 0.000
Carubv10006251m.g Capsella rubella Carubv10006251m.g I 0.000
Carubv10009177m.g Capsella rubella Carubv10009177m.g I 0.000
Carubv10009399m.g Capsella rubella Carubv10009399m.g I 0.000
Carubv10013729m.g Capsella rubella Carubv10013729m.g I 0.000
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I 0.000
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I 0.000
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I 0.000
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I 0.000
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I 0.000
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I 0.000
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I 0.000
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I 0.000
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I 0.000
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I 0.000
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I 0.000
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I 0.000
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I 0.000
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I 0.000
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I 0.000
Lus10002399.g Linum usitatissimum Lus10002399.g I 0.000
Lus10006489.g Linum usitatissimum Lus10006489.g I 0.000
Lus10009755.g Linum usitatissimum Lus10009755.g I 0.000
Lus10014066.g Linum usitatissimum Lus10014066.g I 0.000
Lus10014194.g Linum usitatissimum Lus10014194.g I 0.000
Lus10017049.g Linum usitatissimum Lus10017049.g I 0.000
Lus10021369.g Linum usitatissimum Lus10021369.g I 0.000
Lus10022720.g Linum usitatissimum Lus10022720.g I 0.000
Lus10027897.g Linum usitatissimum Lus10027897.g I 0.000
MDP0000248567 Malus domestica MDP0000248567 I 0.000
MDP0000296303 Malus domestica MDP0000296303 I 0.000
MDP0000701734 Malus domestica MDP0000701734 I 0.000
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I 0.000
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I 0.000
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I 0.000
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I 0.000
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I 0.000
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I 0.000
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I 0.000
Pavir.J00256 Panicum virgatum Pavir.J00256 I 0.000
Pavir.J35078 Panicum virgatum Pavir.J35078 I 0.000
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I 0.000
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I 0.000
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I 0.000
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I 0.000
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I 0.000
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I 0.000
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I 0.000
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I 0.000
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I 0.000
PK02169.1 Cannabis sativa PK02169.1 I 0.000
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I 0.000