ENSLOCG00000004711 (Lepisosteus oculatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSLOCG00000004711 T097620_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.821 0.971
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.821 0.971
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.821 0.971
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.821 0.971
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.821 0.971
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.821 0.971
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.821 0.971
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.821 0.971
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.819 0.964
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.786 0.891
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.786 0.891
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.786 0.891
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.786 0.891
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.786 0.891
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.786 0.891
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.785 0.964
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.784 0.884
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.784 0.884
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.784 0.884
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.776 0.884
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.772 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000005645 C2H2 ZF 229 252
ENSLOCP00000005645 C2H2 ZF 258 280
ENSLOCP00000005645 C2H2 ZF 286 308
ENSLOCP00000005645 C2H2 ZF 314 336
ENSLOCP00000005645 C2H2 ZF 342 364
ENSLOCP00000005645 C2H2 ZF 370 393

Links

Other C2H2 ZF family TFs
Other Lepisosteus oculatus TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GFI1 Homo sapiens ENSG00000162676 D 0.821
GFI1B Homo sapiens ENSG00000165702 D 0.786
Gfi1b Mus musculus ENSMUSG00000026815 D 0.784
Gfi1 Mus musculus ENSMUSG00000029275 D 0.821
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.821
sens-2 Drosophila melanogaster FBgn0051632 D 0.772
CapteG45287 Capitella teleta CapteG45287 I 0.760
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.775
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.765
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.823
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.821
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.812
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.786
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.821
GFI1B Bos taurus ENSBTAG00000012772 I 0.773
GFI1 Bos taurus ENSBTAG00000016723 I 0.823
GFI1B Canis familiaris ENSCAFG00000019877 I 0.783
GFI1 Canis familiaris ENSCAFG00000020155 I 0.821
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.821
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.786
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.818
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.784
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.784
gfi1aa Danio rerio ENSDARG00000020746 I 0.815
gfi1ab Danio rerio ENSDARG00000044457 I 0.822
gfi1b Danio rerio ENSDARG00000079947 I 0.780
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.821
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.783
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.784
GFI1 Equus caballus ENSECAG00000006647 I 0.823
GFI1B Equus caballus ENSECAG00000008127 I 0.783
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.821
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.786
GFI1 Felis catus ENSFCAG00000005914 I 0.821
GFI1B Felis catus ENSFCAG00000027147 I 0.785
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.806
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.806
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.782
GFI1B Gallus gallus ENSGALG00000003478 I 0.786
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.821
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.821
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.786
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.821
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.791
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.778
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.783
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.823
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.821
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.779
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.780
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.786
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.821
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.771
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.823
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.821
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.774
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.821
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.784
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.821
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.783
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.821
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.786
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.774
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.786
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.785
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.821
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.799
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.772
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.825
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.821
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.799
gfi1b Oryzias latipes ENSORLG00000014390 I 0.774
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.821
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.784
GFI1B Procavia capensis ENSPCAG00000012329 I 0.785
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.780
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.799
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.823
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.786
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.818
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.784
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.786
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.823
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.786
GFI1B Sus scrofa ENSSSCG00000005737 I 0.785
GFI1 Sus scrofa ENSSSCG00000006902 I 0.823
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.821
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.787
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.821
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.813
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.770
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.817
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.770
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.799
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.823
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.799
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.772
GF15430 Drosophila ananassae FBgn0092455 I 0.772
GG10437 Drosophila erecta FBgn0102746 I 0.772
GH13715 Drosophila grimshawi FBgn0121191 I 0.772
GI23984 Drosophila mojavensis FBgn0146708 I 0.772
GL26188 Drosophila persimilis FBgn0163770 I 0.772
GM16223 Drosophila sechellia FBgn0171139 I 0.772
GJ21268 Drosophila virilis FBgn0208401 I 0.772
GK24242 Drosophila willistoni FBgn0226203 I 0.772
GE14143 Drosophila yakuba FBgn0231766 I 0.772
LotgiG129344 Lottia gigantea LotgiG129344 I 0.769
LotgiG83709 Lottia gigantea LotgiG83709 I 0.767
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.786
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.773
Aan_R000889 Calypte anna Aan_R000889 I 0.821
Aan_R008865 Calypte anna Aan_R008865 I 0.786
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.786
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.821
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.821
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.821
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.816
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.787
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.773
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.812
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.784
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.810
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.786
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.821
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.766
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.823
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.820
Tal_R001363 Tyto alba Tal_R001363 I 0.786
Tal_R006464 Tyto alba Tal_R006464 I 0.821
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.783
Sakowv30015302m.g Saccoglossus kowalevskii Sakowv30015302m.g I 0.768
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.769
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.772
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.772
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.821
MDOA011065 Musca domestica MDOA011065 I 0.772