ENSXMAG00000001777 (Xiphophorus maculatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSXMAG00000001777 T113731_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.795 0.965
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.795 0.965
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.795 0.965
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.795 0.965
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.795 0.965
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.795 0.965
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.779 0.922
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.779 0.922
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.779 0.922
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.779 0.922
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.779 0.922
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.779 0.922
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.779 0.922
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.779 0.922
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.779 0.922
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.766 0.861
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.766 0.861
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.766 0.861
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.766 0.861
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.766 0.861
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.766 0.861
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.766 0.861
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000001777 C2H2 ZF 492 517
ENSXMAP00000001777 C2H2 ZF 525 552
ENSXMAP00000001777 C2H2 ZF 558 582
ENSXMAP00000001777 C2H2 ZF 588 613
ENSXMAP00000001777 C2H2 ZF 619 644

Links

Other C2H2 ZF family TFs
Other Xiphophorus maculatus TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_11607 Cicer arietinum Ca_11607 I 0.000
Cucsa.141640 Cucumis sativus Cucsa.141640 I 0.000
Cucsa.117300 Cucumis sativus Cucsa.117300 I 0.000
cassava40748.m1 Manihot esculenta cassava40748.m1 I 0.000
cassava39602.m1 Manihot esculenta cassava39602.m1 I 0.000
29739.m003775 Ricinus communis 29739.m003775 I 0.000
29706.m001283 Ricinus communis 29706.m001283 I 0.000
Pm027054 Prunus mume Pm027054 I 0.000
Pm013274 Prunus mume Pm013274 I 0.000
Cla017125 Citrullus lanatus Cla017125 I 0.000
Cla012781 Citrullus lanatus Cla012781 I 0.000
Cla011348 Citrullus lanatus Cla011348 I 0.000
Ca_23149 Cicer arietinum Ca_23149 I 0.000
Cucsa.192190 Cucumis sativus Cucsa.192190 I 0.000
Ca_10012 Cicer arietinum Ca_10012 I 0.000
VIT_09s0002g01350 Vitis vinifera VIT_09s0002g01350 I 0.000
TRIUR3_30418 Triticum urartu TRIUR3_30418 I 0.000
Traes_6DL_4C3F04219 Triticum aestivum Traes_6DL_4C3F04219 I 0.000
Traes_6BL_7462E6F9B Triticum aestivum Traes_6BL_7462E6F9B I 0.000
Traes_6AL_F5BFFCA3E Triticum aestivum Traes_6AL_F5BFFCA3E I 0.000
TCM_037550 Theobroma cacao TCM_037550 I 0.000
TCM_029130 Theobroma cacao TCM_029130 I 0.000
Solyc07g041640.2 Solanum lycopersicum Solyc07g041640.2 I 0.000
Si017511m.g Setaria italica Si017511m.g I 0.000
AMTR_s00048p00216350 Amborella trichopoda AMTR_s00048p00216350 I 0.000
Lus10000473.g Linum usitatissimum Lus10000473.g I 0.000
LjT10E17.120.nd Lotus japonicus LjT10E17.120.nd I 0.000
SapurV1A.0616s0110 Salix purpurea SapurV1A.0616s0110 I 0.000
SapurV1A.0087s0080 Salix purpurea SapurV1A.0087s0080 I 0.000
Pavir.J14128 Panicum virgatum Pavir.J14128 I 0.000
Pavir.J03212 Panicum virgatum Pavir.J03212 I 0.000
Pavir.Aa00919 Panicum virgatum Pavir.Aa00919 I 0.000
orange1.1g023105m.g Citrus sinensis orange1.1g023105m.g I 0.000
MDP0000274400 Malus domestica MDP0000274400 I 0.000
MDP0000243533 Malus domestica MDP0000243533 I 0.000
Lus10033441.g Linum usitatissimum Lus10033441.g I 0.000
Lus10004455.g Linum usitatissimum Lus10004455.g I 0.000
Sb04g034800 Sorghum bicolor Sb04g034800 I 0.000
Lus10000468.g Linum usitatissimum Lus10000468.g I 0.000
Gorai.011G058800 Gossypium raimondii Gorai.011G058800 I 0.000
Gorai.009G035200 Gossypium raimondii Gorai.009G035200 I 0.000
gene12474-v1.0-hybrid Fragaria vesca gene12474-v1.0-hybrid I 0.000
gene07429-v1.0-hybrid Fragaria vesca gene07429-v1.0-hybrid I 0.000
evm.TU.supercontig_28.61 Carica papaya evm.TU.supercontig_28.61 I 0.000
Eucgr.F04420 Eucalyptus grandis Eucgr.F04420 I 0.000
Eucgr.C00823 Eucalyptus grandis Eucgr.C00823 I 0.000
Ciclev10025855m.g Citrus clementina Ciclev10025855m.g I 0.000
Ciclev10008922m.g Citrus clementina Ciclev10008922m.g I 0.000
Aquca_076_00086 Aquilegia coerulea Aquca_076_00086 I 0.000
GLYMA13G16924 Glycine max GLYMA13G16924 I 0.000
MLOC_64055 Hordeum vulgare MLOC_64055 I 0.000
LPERR06G06090 Leersia perrieri LPERR06G06090 I 0.000
LPERR02G28430 Leersia perrieri LPERR02G28430 I 0.000
GSMUA_Achr8G30640_001 Musa acuminata GSMUA_Achr8G30640_001 I 0.000
GSMUA_Achr7G02330_001 Musa acuminata GSMUA_Achr7G02330_001 I 0.000
GRMZM5G893117 Zea mays GRMZM5G893117 I 0.000
GRMZM5G850129 Zea mays GRMZM5G850129 I 0.000
GRMZM2G105335 Zea mays GRMZM2G105335 I 0.000
GRMZM2G067743 Zea mays GRMZM2G067743 I 0.000
GLYMA17G05800 Glycine max GLYMA17G05800 I 0.000
GLYMA16G00971 Glycine max GLYMA16G00971 I 0.000
GLYMA15G19460 Glycine max GLYMA15G19460 I 0.000
MTR_0001s0490 Medicago truncatula MTR_0001s0490 I 0.000
GLYMA12G01730 Glycine max GLYMA12G01730 I 0.000
GLYMA11G11826 Glycine max GLYMA11G11826 I 0.000
GLYMA11G01060 Glycine max GLYMA11G01060 I 0.000
GLYMA09G07990 Glycine max GLYMA09G07990 I 0.000
GLYMA07G04290 Glycine max GLYMA07G04290 I 0.000
GLYMA01G44471 Glycine max GLYMA01G44471 I 0.000
F775_24390 Aegilops tauschii F775_24390 I 0.000
F775_13620 Aegilops tauschii F775_13620 I 0.000
BRADI3G57267 Brachypodium distachyon BRADI3G57267 I 0.000
BRADI1G46427 Brachypodium distachyon BRADI1G46427 I 0.000
BGIOSGA022506 Oryza indica BGIOSGA022506 I 0.000
GRF1 Oryza indica BGIOSGA005497 I 0.000
ORGLA02G0298900 Oryza glaberrima ORGLA02G0298900 I 0.000
PRUPE_ppa015791mg Prunus persica PRUPE_ppa015791mg I 0.000
POPTR_0018s07140 Populus trichocarpa POPTR_0018s07140 I 0.000
POPTR_0006s14560 Populus trichocarpa POPTR_0006s14560 I 0.000
POPTR_0003s06360 Populus trichocarpa POPTR_0003s06360 I 0.000
PGSC0003DMG400013004 Solanum tuberosum PGSC0003DMG400013004 I 0.000
GRF2 Oryza sativa OS06G0204800 I 0.000
GRF1 Oryza sativa OS02G0776900 I 0.000
ORUFI06G06870 Oryza rufipogon ORUFI06G06870 I 0.000
ORUFI02G36060 Oryza rufipogon ORUFI02G36060 I 0.000
ORGLA06G0059900 Oryza glaberrima ORGLA06G0059900 I 0.000
PRUPE_ppa017593mg Prunus persica PRUPE_ppa017593mg I 0.000
OPUNC02G31900 Oryza punctata OPUNC02G31900 I 0.000
ONIVA02G36590 Oryza nivara ONIVA02G36590 I 0.000
OMERI06G07610 Oryza meridionalis OMERI06G07610 I 0.000
OMERI02G32800 Oryza meridionalis OMERI02G32800 I 0.000
OGLUM06G07010 Oryza glumaepatula OGLUM06G07010 I 0.000
OGLUM02G35690 Oryza glumaepatula OGLUM02G35690 I 0.000
OBART02G34550 Oryza barthii OBART02G34550 I 0.000
OB02G41370 Oryza brachyantha OB02G41370 I 0.000
MTR_8g020560 Medicago truncatula MTR_8g020560 I 0.000
MTR_4g125490 Medicago truncatula MTR_4g125490 I 0.000
MTR_2g041430 Medicago truncatula MTR_2g041430 I 0.000
Si006922m.g Setaria italica Si006922m.g N 0.000
Sb10g006690 Sorghum bicolor Sb10g006690 N 0.000