GLYMA16G27280 (Glycine max)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 GLYMA16G27280 T118429_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.797 0.933
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.797 0.933
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA16G27280.1 C2H2 ZF 359 381
GLYMA16G27280.1 C2H2 ZF 380 411

Links

Other C2H2 ZF family TFs
Other Glycine max TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OLONG_002570 Oryza longistaminata OLONG_002570 I 0.000
fgenesh2_pg.scaffold_12000136 Monosiga brevicollis fgenesh2_pg.scaffold_12000136 N 0.000
ORUFI12G05060 Oryza rufipogon ORUFI12G05060 N 0.000
PRUPE_ppa024046mg Prunus persica PRUPE_ppa024046mg N 0.000
PVAR5_0486 Byssochlamys spectabilis PVAR5_0486 N 0.000
Sb02g013020 Sorghum bicolor Sb02g013020 N 0.000
TRIUR3_02266 Triticum urartu TRIUR3_02266 N 0.000
ZBAI_00205 Zygosaccharomyces bailii ZBAI_00205 N 0.000
Hsal_00106--NA Harpegnathos saltator Hsal_00106--NA N 0.000
ORUFI11G04600 Oryza rufipogon ORUFI11G04600 N 0.000
Lus10019949.g Linum usitatissimum Lus10019949.g N 0.000
Lus10042195.g Linum usitatissimum Lus10042195.g N 0.000
Pavir.Fa00930 Panicum virgatum Pavir.Fa00930 N 0.000
EFA80760.1 Polysphondylium pallidum EFA80760.1 N 0.000
fgenesh1_pg.C_scaffold_4001082 Cryphonectria parasitica fgenesh1_pg.C_scaffold_4001082 N 0.000
BGLB003577 Biomphalaria glabrata BGLB003577 N 0.000
CGOC_0000468301 Cylicostephanus goldi CGOC_0000468301 N 0.000
CAOG_03637 Capsaspora owczarzaki CAOG_03637 N 0.000
OBART02G32430 Oryza barthii OBART02G32430 N 0.000
OB07G12490 Oryza brachyantha OB07G12490 N 0.000
LPERR02G20610 Leersia perrieri LPERR02G20610 N 0.000
H311_00925 Anncaliia algerae H311_00925 N 0.000
GE16904 Drosophila yakuba FBgn0234394 N 0.000
GK18872 Drosophila willistoni FBgn0220870 N 0.000
GF19613 Drosophila ananassae FBgn0096620 N 0.000
BLOC1S6 Sorex araneus ENSSARG00000009861 N 0.000
Sec61g-ps1 Rattus norvegicus ENSRNOG00000049451 N 0.000
Sec61gl Rattus norvegicus ENSRNOG00000049016 N 0.000
BLOC1S6 Loxodonta africana ENSLAFG00000000655 N 0.000
TRIM56 Anolis carolinensis ENSACAG00000007859 N 0.000
Bra032973 Brassica rapa Bra032973 N 0.000
BGIOSGA037077 Oryza indica BGIOSGA037077 N 0.000