GSMUA_Achr10G15970_001 (Musa acuminata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 GSMUA_Achr10G15970_001 T118646_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.768 0.907
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.768 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr10P15970_001 C2H2 ZF 257 279
GSMUA_Achr10P15970_001 C2H2 ZF 280 309

Links

Other C2H2 ZF family TFs
Other Musa acuminata TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
STOP1 Arabidopsis thaliana AT1G34370 D 0.768
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.792
PK23301.1 Cannabis sativa PK23301.1 I 0.768
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.792
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.792
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.768
Ca_04300 Cicer arietinum Ca_04300 I 0.768
Cla016623 Citrullus lanatus Cla016623 I 0.762
Pm022201 Prunus mume Pm022201 I 0.768
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.768
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.762
mgf000060m Mimulus guttatus mgf000060m I 0.768
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.792
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.768
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.768
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.768
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.759
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.768
Lus10009435.g Linum usitatissimum Lus10009435.g I 0.768
MDP0000141403 Malus domestica MDP0000141403 I 0.768
MDP0000199559 Malus domestica MDP0000199559 I 0.768
MDP0000453148 Malus domestica MDP0000453148 I 0.782
MDP0000551046 Malus domestica MDP0000551046 I 0.768
MDP0000807856 Malus domestica MDP0000807856 I 0.768
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.768
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.768
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.792
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.798
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.798
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.768
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.792
OB01G47470 Oryza brachyantha OB01G47470 I 0.792
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.792
Bo8g027000 Brassica oleracea Bo8g027000 I 0.768
Bra040971 Brassica rapa Bra040971 I 0.792
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.792
F775_04088 Aegilops tauschii F775_04088 I 0.792
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.768
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.798
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.798
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.798
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.792
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.792
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.768
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.792
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.792
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I 0.792
OBART01G38810 Oryza barthii OBART01G38810 I 0.792
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.792
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.792
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.792
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.792
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I 0.792
OS01G0871200 Oryza sativa OS01G0871200 I 0.792
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.759
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.768
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.768
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.792
Si001053m.g Setaria italica Si001053m.g I 0.792
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.759
TCM_036719 Theobroma cacao TCM_036719 I 0.759