CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

POPTR_0019s11520 *(Populus trichocarpa)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	POPTR_0019s11520	T126851_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
STOP1 M06801_2.00	Arabidopsis thaliana	CCTBCMCCAGDTRHHMCYY	RRGKDDYAHCTGGKGVAGG	Dap-seq OMalley et al.(2016) STOP1_col_a	0.797	0.933
STOP1 M06802_2.00	Arabidopsis thaliana	RCCTNCMCCRGWWRN	NYWWCYGGKGNAGGY	Dap-seq OMalley et al.(2016) STOP1_colamp_a	0.797	0.933
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0019s11520.1	C2H2 ZF	359	381	YTCSRCNTKKFSVTADLKTHEKH
POPTR_0019s11520.1	C2H2 ZF	380	411	KHCGKDRWLCSCGTTFSRKDKLFGHIALFQGH

Links
Other C2H2 ZF family TFs
Other *Populus trichocarpa* TFs