scaffold_303767.1 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 scaffold_303767.1 T128304_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G15740
M06810_2.00 		Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW		 Dap-seq
OMalley et al.(2016)
AT2G15740_col_a 		0.827 0.957
AT5G22990
M06821_2.00 		Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW		 Dap-seq
OMalley et al.(2016)
AT5G22990_col_a 		0.825 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_303767.1 C2H2 ZF 245 267

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gl Drosophila melanogaster FBgn0004618 D
Sakowv30008117m.g Saccoglossus kowalevskii Sakowv30008117m.g I
KGM_06609 Danaus plexippus KGM_06609 I
LotgiG155751 Lottia gigantea LotgiG155751 I
MCINX014711 Melitaea cinxia MCINX014711 I
ML19062a Mnemiopsis leidyi ML19062a I
NV10631 Nasonia vitripennis NV10631 I
SMAR000758 Strigamia maritima SMAR000758 I
SPU_007599 Strongylocentrotus purpuratus SPU_007599 I
TC012565 Tribolium castaneum TC012565 I
tetur07g01570 Tetranychus urticae tetur07g01570 I
YQE_07567 Dendroctonus ponderosae YQE_07567 I
Ocbimv22030200m.g Octopus bimaculoides Ocbimv22030200m.g I
HMEL016965 Heliconius melpomene HMEL016965 I
CLEC000700 Cimex lectularius CLEC000700 I
LCUP002895 Lucilia cuprina LCUP002895 I
AATE012213 Anopheles atroparvus AATE012213 I
ACUA005738 Anopheles culicifacies ACUA005738 I
AFAF008430 Anopheles farauti AFAF008430 I
AFUN002458 Anopheles funestus AFUN002458 I
AMAM014008 Anopheles maculatus AMAM014008 I
BGLB012448 Biomphalaria glabrata BGLB012448 I
MDOA012721 Musca domestica MDOA012721 I
PXEA_0003135501 Protopolystoma xenopodis PXEA_0003135501 I
GG16477 Drosophila erecta FBgn0108708 I
ACEP21757 Atta cephalotes ACEP21757 I
ACYPI008619 Acyrthosiphon pisum ACYPI008619 I
ADAC004790 Anopheles darlingi ADAC004790 I
AGAP004331 Anopheles gambiae AGAP004331 I
CapteG4919 Capitella teleta CapteG4919 I
CGI_10011936 Crassostrea gigas CGI_10011936 I
CPIJ006366 Culex quinquefasciatus CPIJ006366 I
gl Drosophila virilis FBgn0015211 I
GA20515 Drosophila pseudoobscura FBgn0080509 I
GF18117 Drosophila ananassae FBgn0095135 I
ISCW013678 Ixodes scapularis ISCW013678 I
GH19229 Drosophila grimshawi FBgn0126695 I
GI24263 Drosophila mojavensis FBgn0146986 I
GL23194 Drosophila persimilis FBgn0160784 I
GM18708 Drosophila sechellia FBgn0173613 I
GD20175 Drosophila simulans FBgn0191653 I
GK11495 Drosophila willistoni FBgn0213506 I
GE25205 Drosophila yakuba FBgn0242289 I
GB43258 Apis mellifera GB43258 I
HelroG86767 Helobdella robusta HelroG86767 I
CpipJ_CPIJ006366 Culex pipiens CpipJ_CPIJ006366 I
Aqu1.227223 Amphimedon queenslandica Aqu1.227223 N