SMAR001730 (Strigamia maritima)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 SMAR001730 T129032_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.779 0.885
wor
M03664_2.00 		Drosophila melanogaster
GYRACAGGTGYAH
DTRCACCTGTYRC		 SELEX
Nitta et al.(2015)
wor_1 		0.759 0.832
wor
M03665_2.00 		Drosophila melanogaster
DTRCACCTGTYGY
RCRACAGGTGYAH		 SELEX
Nitta et al.(2015)
wor_2 		0.759 0.832
wor
M06051_2.00 		Drosophila melanogaster
CACCTGY
RCAGGTG		 B1H
Zhu et al.(2011)
wor_SANGER_2.5_FBgn0001983 		0.759 0.832
wor
M06052_2.00 		Drosophila melanogaster
VCACCTGY
RCAGGTGB		 B1H
Zhu et al.(2011)
wor_SOLEXA_2.5_FBgn0001983 		0.759 0.832
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMAR001730-PA C2H2 ZF 235 257
SMAR001730-PA C2H2 ZF 266 288
SMAR001730-PA C2H2 ZF 292 314
SMAR001730-PA C2H2 ZF 320 342
SMAR001730-PA C2H2 ZF 348 368

Links

Other C2H2 ZF family TFs
Other Strigamia maritima TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla006433 Citrullus lanatus Cla006433 N
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N
Eucgr.B03716 Eucalyptus grandis Eucgr.B03716 N
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N
30024.m001746 Ricinus communis 30024.m001746 N
Pm012190 Prunus mume Pm012190 N
GLYMA01G43620 Glycine max GLYMA01G43620 N
Ca_27441 Cicer arietinum Ca_27441 N
Ca_11133 Cicer arietinum Ca_11133 N
SCL3 Vitis vinifera VIT_06s0009g02390 N
TCM_040833 Theobroma cacao TCM_040833 N
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N
SCL3 Populus trichocarpa POPTR_0009s05330 N
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N
MTR_5g009080 Medicago truncatula MTR_5g009080 N
MTR_4g076140 Medicago truncatula MTR_4g076140 N
GLYMA12G02490 Glycine max GLYMA12G02490 N
GLYMA11G10170 Glycine max GLYMA11G10170 N