CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SMAR006131 *(Strigamia maritima)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	SMAR006131	T129084_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
lin-48 M00614_2.00	Caenorhabditis elegans	HCCGTTAB	VTAACGGD	PBM Narasimhan et al.(2015) pTH9155	0.786	0.797
ovo M03669_2.00	Drosophila melanogaster	DNMCCGTTA	TAACGGKNH	SELEX Nitta et al.(2015) ovo_1	0.778	0.812
ovo M06064_2.00	Drosophila melanogaster	CHGTTAHW	WDTAACDG	B1H Zhu et al.(2011) ovo_FlyReg_FBgn0003028	0.778	0.812
ovo M06065_2.00	Drosophila melanogaster	RGTHCCGTTAT	ATAACGGDACY	B1H Zhu et al.(2011) ovo_SANGER_5_FBgn0003028	0.778	0.812
ovo M06066_2.00	Drosophila melanogaster	DDTMCCGTTABNYN	NRNVTAACGGKAHH	B1H Zhu et al.(2011) ovo_SOLEXA_5_FBgn0003028	0.778	0.812
ovo M02671_2.00	Drosophila melanogaster	DCNGTTWSD	HSWAACNGH	SELEX Mathelier et al.(2014) MA0126.1	0.778	0.812
ovo M09662_2.00	Drosophila melanogaster	DCNGTTAMWNNDV	BHNNWKTAACNGH	Misc Kulakovskiy et al.(2009) ovo	0.778	0.812
ovo M10373_2.00	Drosophila melanogaster	NNNDCNGTTWSDDNN	NNHHSWAACNGHNNN	Transfac Matys et al.(2006) I$OVO_01	0.778	0.812
ovo M10374_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$OVO_Q6	0.778	0.812
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
SMAR006131-PA	C2H2 ZF	257	279	YTCRVCHKMFSLQRLLNRHLKCH
SMAR006131-PA	C2H2 ZF	285	307	YLCVFCSKGFNDTFDLKRHTRTH
SMAR006131-PA	C2H2 ZF	313	336	YICSYCNKSFTQRCSLESHLLKVH

Links
Other C2H2 ZF family TFs
Other *Strigamia maritima* TFs

65 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AGAP005245	Anopheles gambiae	AGAP005245	N
AMAM000379	Anopheles maculatus	AMAM000379	N
ASTEI05994	Anopheles stephensi	ASTEI05994	N